Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1507 ATGAAGTTTGGCAAACAATTTAGCGCACAGATGGTTCCTGAATGGCGCCAAGCTTACATGGATTACGATTTTCTCAAATCCCTCTTGAAGCAAATTGATAGCTTCAATGAATCCCAAGCGAAAAACTACCCCCCGAGCCACTCCGGCCAACTCCGCAGGACCCTGACCCTTTACCGCGCTTTTAGCGGCTTAACACTCCGTCACAGCCATAGCCACGGCCACAGTCATGGTCCTACGAGTCCAGGTTCACCCCCGGATGTGGAGGAGCAGGCGATATTGGTGAACGCGGTGAACCGGGACGGGACGAAGAAGTACCGGACGACGTTTTTGATGGCGGAGGAGGAAGGAGGGGAGTACGAGCTGGTGTACTTCAGGTCGTTGGACAGGGAGTTCAATAAGGTACACAAGTTCTACAAGACCAAGGTGGAGGAAGTAGTAAAGGAGGCGAGTGTGTTGAACAAGCAGATGGATGCTCTGATTGCTTTCAGAATCAAAGTAGAGAATCCTGAGGGAGTTTGGGATTTCTCGGGCGACCGGTCGGAGGAGATTACGCGGCTGGCTACTGATATTGCTGCTTCAACGGCTGCTTTGTCTTCTTCAACTCCTTCTGGGGTTAGAGCCAGCAGAAGGGTTCATATAGCTATGGACGCCATAGACGAAGGCGAAGGCGGGTCGGGGAACAACAACAACCACAAACCAAATACCAAATTAAAAAATGAAAATAAAGAACACAAATCCAAGGATGAAGAAAAAAGGAAAACAAGATCAAAAATGAAAGCCAATAGGCCACCTCCACTTGAACTCCTTGATCGTGTTAAAATGAACACAACCGTAGAGACTCCCAGATCCACCATTAAAGGCCTTCTCAACTTCCCAAAAAATTCAGAACTTCAATTCAACAAACAAAATCTCAACAAAATTGAAAACCAACTCAAAAAGGCTTTTGTTGTGTTTTACCACAAGCTTAGACTACTCAAGAGCTTCAGCTTCTTGAATACTTTGGCGTTTTCAAAGATAATGAAGAAATATGATAAGATTACTTCAAGAGGTGCAGGAAAGGCATACATGAAGATGGTAGACACCTCTGACCTTGGAAGTTCTGATGAGGTTTCTAAGCTAATGGAGAGGGTAGAAGCTACATTTATCAAACACTTCTGCAATGCTAATCGAACCAAAGGAATGAATATATTGAGACCCAAAGAAAAGAAGGAAAGACATAGAACTACATTTTCTGTTGGTTTCTTTGCTGGTTGCACCGTAGCTCTTGTCGTCGCTCTCGTTTTTATTATACAAGCCCGACATATACTAGATAAAGAAGGCAGCAATCAATATATGGAAACAATGTTTCCCCTTTATAGCTTGTTCGGATTCATCGTGTTGCACCTGCTAATGTATGCAGCAAACATATACTTTTGGAGGAAATACCAAGTGAATTATTCTTTCATATTTGGTTTCAAGCAAGGCACTGAATTGGCATACCGTGAAGTTCTTCTTCCCAGTTTTGCTGTGGCAACTCTTGCTTTAGCATGTGTTCTTTCTAACCTTAACATGGAGATGGACCCTCAAACCAAATCATATCAAGCTGTGACTGAACTTCTACCCTTGGTTTTGCTCCTTCTTGTGAGTGCAGTTTTCTTGTGTCCTTTCAACATCTTATATCGCTCGAGTCGCGTGTTTTGCATCAGAACCTTGTATCACTGCATATGTGCTCCCCTCTATGTGGTTATCTTCCCTGATTTCTTTATGGCAGATCAAATAACCAGCCAGGTGCAAGCACTTCGTAGCTTGGAATTCTACATTTGCTATTACGGTTGGGGAAATTATAAGCATCGACGAAACACCTGTAGAACAAATGATGTATTCAACACTTTCAATTTCATCATTGCTGTTATTCCATATTGGTCACGTCTTCTTCAGTGTCTCAGACGACTGTACAACGAGAAAGACGCAATGCACGGATATAACGGAGTGAAGTACTTCTTGACCATTGTAGCTGTTTGCTTGAGGACAGCTTACAGTCTGAACAAGGGAGCAACCTGGAAAGTGCTAGCTGCAGTTTTCTCAGCTGTGGCTGCCATTATATGTACGTATTGGGACATCGCCATCGACTGGGGCCTGCTACAACGACATTCCAAGAACTACTTGTTGAGAGACAAGCTACTTGTTGGTCACAAAAGTGTCTACTTTGTGGCTATGGCCTTGAATGTTCTGCTGAGGTTTGCTTGGCTACAAACTGTGTTAGATTTCAAGTTCTCCTTCCTGCACACACAGGGATTGATCACAATAGTTGCCAGCCTCGAGATTATTCGTCGTGGCATATGGAACTTCTTCAGGTTGGAGAATGAGCATCTGAACAATGTTGGGAAGTACCGTGCATTTAAATCTGTACCGCTTCCTTTCAACTATGATGAAGATGATGACAAAGATGACTAA 2433 43.65 MKFGKQFSAQMVPEWRQAYMDYDFLKSLLKQIDSFNESQAKNYPPSHSGQLRRTLTLYRAFSGLTLRHSHSHGHSHGPTSPGSPPDVEEQAILVNAVNRDGTKKYRTTFLMAEEEGGEYELVYFRSLDREFNKVHKFYKTKVEEVVKEASVLNKQMDALIAFRIKVENPEGVWDFSGDRSEEITRLATDIAASTAALSSSTPSGVRASRRVHIAMDAIDEGEGGSGNNNNHKPNTKLKNENKEHKSKDEEKRKTRSKMKANRPPPLELLDRVKMNTTVETPRSTIKGLLNFPKNSELQFNKQNLNKIENQLKKAFVVFYHKLRLLKSFSFLNTLAFSKIMKKYDKITSRGAGKAYMKMVDTSDLGSSDEVSKLMERVEATFIKHFCNANRTKGMNILRPKEKKERHRTTFSVGFFAGCTVALVVALVFIIQARHILDKEGSNQYMETMFPLYSLFGFIVLHLLMYAANIYFWRKYQVNYSFIFGFKQGTELAYREVLLPSFAVATLALACVLSNLNMEMDPQTKSYQAVTELLPLVLLLLVSAVFLCPFNILYRSSRVFCIRTLYHCICAPLYVVIFPDFFMADQITSQVQALRSLEFYICYYGWGNYKHRRNTCRTNDVFNTFNFIIAVIPYWSRLLQCLRRLYNEKDAMHGYNGVKYFLTIVAVCLRTAYSLNKGATWKVLAAVFSAVAAIICTYWDIAIDWGLLQRHSKNYLLRDKLLVGHKSVYFVAMALNVLLRFAWLQTVLDFKFSFLHTQGLITIVASLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFNYDEDDDKDD 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39757228 39764063 + Sed0027706.1 Sed06g1507 718050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1507 810 ProSiteProfiles SPX domain profile. 1 357 IPR004331 -
Sed06g1507 810 Coils Coil 237 257 - -
Sed06g1507 810 Pfam EXS family 448 784 IPR004342 GO:0016020(InterPro)
Sed06g1507 810 Pfam SPX domain 1 359 IPR004331 -
Sed06g1507 810 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 808 - GO:0000822(PANTHER)|GO:0005737(PANTHER)|GO:0005794(PANTHER)|GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0006817(PANTHER)|GO:0015114(PANTHER)|GO:0016036(PANTHER)
Sed06g1507 810 ProSiteProfiles EXS domain profile. 616 810 IPR004342 GO:0016020(InterPro)
Sed06g1507 810 MobiDBLite consensus disorder prediction 218 263 - -
Sed06g1507 810 MobiDBLite consensus disorder prediction 235 256 - -
Sed06g1507 810 MobiDBLite consensus disorder prediction 68 87 - -
Sed06g1507 810 CDD SPX_PHO1_like 2 353 IPR034092 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1507 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1507 Sed-Chr6:39757228 Sed07g1955 Sed-Chr7:34106337 0.00E+00 dispersed
Sed11g2017 Sed-Chr11:34304356 Sed06g1507 Sed-Chr6:39757228 1.70E-230 wgd
Sed03g0224 Sed-Chr3:1439375 Sed06g1507 Sed-Chr6:39757228 2.90E-205 wgd
Sed06g1507 Sed-Chr6:39757228 Sed07g1954 Sed-Chr7:34058648 3.30E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g964 . . . . . . . . . Cmo18g01150 . Cma18g01128 . Car18g01042 Sed06g1507 . . Bhi07g01530 Tan04g1051 Cmetu06g0752 Lac13g0343 Hepe10g1767 . . Cla05g02420 Cam05g2601 Cec05g2632 Cco05g2672 Clacu05g2602 Cmu05g2456 Cre05g2572 . . . . Lsi04g00392 . Chy10g01029 Cme10g00389 . . . . . . . . . . . . . . Car15g00256 Cpe13g00964 . . . . . . . . . . . . . . . . . Chy09g00228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193