Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1515 ATGGCCTCTGTCCTTTTCCTTTTGGCAGGCTTCTCTGCCATAGTTTCCTCTGTTGATGCCTATGCAGGTGGAGGCTGGACCGGCGCTCACGCCACATTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGTAATTTATACAGCCAAGGCTATGGAACAAACACTGCTGCTCTGAGTACGGCTCTGTTCAACAAAGGGTTGAGCTGTGGATCTTGCTATGAGATTAGGTGCAGCAGTGGGCCTAAATGGTGCCTGCCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACTATGCCCTCCCCAACAACAATGGAGGCTGGTGCAACCCTCCATTGCAGCACTTTGATCTCTCTCAGCCTGTCTTCCAACACATTGCTCAGTACAGAGCAGGAATTGTGCCTGTTGCCTACAGGAGGGTACCCTGCAGAAGAAGGGGAGGGATAAGGTTCACCATCAATGGGCACTCCTACTTCAACCTGGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACATGCAGTTTCAGTCAAAGGCTCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGCAACAGCTACCTCAATGGCCAAAGCCTCTCCTTCAAGGTTACCACCAGCGATGGCCGGACCGTAATTTCCAACAACGTTGTCCCGGCCCGCTGGTCCTTTGGACAGACTTTCAGTGGTGCTCAATTCTGA 747 52.48 MASVLFLLAGFSAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNKGLSCGSCYEIRCSSGPKWCLPGSIVVTATNFCPPNYALPNNNGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNVVPARWSFGQTFSGAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39836514 39838420 + Sed0014934.1 Sed06g1515 718058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1515 248 PANTHER EXPANSIN-A15 6 248 IPR002963 GO:0009664(InterPro)
Sed06g1515 248 Gene3D - 156 248 IPR036749 -
Sed06g1515 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576(InterPro)
Sed06g1515 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Sed06g1515 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
Sed06g1515 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Sed06g1515 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Sed06g1515 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Sed06g1515 248 SMART dpbb_1 61 146 IPR007112 -
Sed06g1515 248 FunFam Expansin 15 152 - -
Sed06g1515 248 CDD DPBB_EXPA_N 25 151 - -
Sed06g1515 248 FunFam Expansin 156 248 - -
Sed06g1515 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
Sed06g1515 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664(InterPro)
Sed06g1515 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664(InterPro)
Sed06g1515 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Sed06g1515 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664(InterPro)
Sed06g1515 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
Sed06g1515 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664(InterPro)
Sed06g1515 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664(InterPro)
Sed06g1515 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Sed06g1515 248 Gene3D - 12 152 IPR036908 -
Sed06g1515 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Sed06g1515 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Sed06g1515 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Sed06g1515 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Sed06g1515 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Sed06g1515 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0339 Sed-Chr3:2053217 Sed06g1515 Sed-Chr6:39836514 1.40E-111 dispersed
Sed03g0910 Sed-Chr3:5610947 Sed06g1515 Sed-Chr6:39836514 1.00E-72 dispersed
Sed04g3772 Sed-Chr4:46358086 Sed06g1515 Sed-Chr6:39836514 1.70E-72 dispersed
Sed05g2978 Sed-Chr5:40441191 Sed06g1515 Sed-Chr6:39836514 5.00E-104 dispersed
Sed06g1515 Sed-Chr6:39836514 Sed08g0228 Sed-Chr8:1292903 8.60E-114 dispersed
Sed08g1977 Sed-Chr8:34164854 Sed06g1515 Sed-Chr6:39836514 9.70E-96 transposed
Sed11g1104 Sed-Chr11:26746562 Sed06g1515 Sed-Chr6:39836514 1.90E-95 transposed
Sed03g0216 Sed-Chr3:1374385 Sed06g1515 Sed-Chr6:39836514 1.90E-100 wgd
Sed06g1515 Sed-Chr6:39836514 Sed07g1937 Sed-Chr7:33891417 1.60E-128 wgd
Sed06g1515 Sed-Chr6:39836514 Sed08g2079 Sed-Chr8:34965760 2.90E-93 wgd
Sed06g1515 Sed-Chr6:39836514 Sed08g0227 Sed-Chr8:1292903 8.60E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1515 - - - 0.0