Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1537 ATGTCGGCAGATTCCTCTACAGAGCGTGCACTGTTGGGGGGCGCTATGGGTAGCACATTCCCTCTCAGGTTCCAGGACGTGAGCAACATTCGACAAGTCCCCGATCATCAGGAAGTGTTTGTGGATCCATCTCGGGATGAAAGCTTGATCTTTGAGCTTTTAGATTTTAAGCATGATGTTGGAGATAATGGAAGTGCTGTTTGGTTCCTTCAAGACCTTGCCACAGAGCAGGATGCAGAGGGAAGCATGGTGCTTGAGCAATCTGGAGTGATCGAGGCACCTGGATTGTGTTATCGAAATATACCCTCTGTCATTACAACTGCAGTTGGCCAAATGGCAATTTCAAAGGGCCGGCAAGGCAGAGAAGCTCAAAATATTGTCAGGGTTTATTTGGCGAATCTACGTCTTAAAGGAGCCGGTACTGATATGCTGATCTGTGCATATGAACCCATCCTTATAAATCCTTTGAGCGAAAGTGCTAGCTCAGTTGGCTCTGGTCTAGCCACTCCTGCTCCACAATCCGGACACCTCCCGATGTCCGAGGTATTCAAACTTGCAGTCTCCAGCTTTAAAGTCTACGACTGGAGTGTTTTTGGCACACCTGCCTAA 609 48.11 MSADSSTERALLGGAMGSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVLEQSGVIEAPGLCYRNIPSVITTAVGQMAISKGRQGREAQNIVRVYLANLRLKGAGTDMLICAYEPILINPLSESASSVGSGLATPAPQSGHLPMSEVFKLAVSSFKVYDWSVFGTPA 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40108307 40113245 + Sed0027317.2 Sed06g1537 718080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1537 202 SUPERFAMILY Mog1p/PsbP-like 6 199 IPR016123 -
Sed06g1537 202 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 5 199 - -
Sed06g1537 202 Pfam Ran-interacting Mog1 protein 10 150 IPR007681 -
Sed06g1537 202 PANTHER RAN GUANINE NUCLEOTIDE RELEASE FACTOR 5 200 IPR007681 GO:0005085(PANTHER)|GO:0005634(PANTHER)|GO:0006606(PANTHER)|GO:0031267(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1537 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1536 Sed-Chr6:40108244 Sed06g1537 Sed-Chr6:40108307 1.90E-111 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g895 . . . . . . . . Cmo04g01730 . . . . . Sed06g1537 . Cpe01g01459 Bhi07g01575 Tan04g1090 Cmetu10g1591 Lac13g0310 Hepe10g1733 . . Cla05g02450 Cam05g2636 Cec05g2669 Cco05g2707 Clacu05g2639 Cmu05g2493 Cre05g2606 . . Cone6ag0596 Cone9ag0599 Lsi04g00433 Csa05g02441 Chy10g00993 Cme10g00424 . . . . . . . . . . . Cma04g01650 . Car04g01691 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008380 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 2 2 1 34