Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1538 ATGATCAATATGGATGGTGAAAATGGAATCCGAAGACCTAATTTCCCCCTTCAATTGTTAGAGAAAAAAGAAGAACATCGCCAACAACAACACCCATGTTCCTCCTCCGCCAACAACGGAGCAGCAACAACAACGACGACAACAACAACAACGACAACATCAACACTCATACAGACAAATCTTGAATCTAATTCTTCCTCCTGTTTGCCCAAGAAGCCCACCCCGAAACGGCCCCCCACCAAAGACCGTCACACCAAAGTGGATGGCCGCGGCCGCCGCATCCGCATGCCTGCCCTATGTGCTGCTAGGGTTTTTCAGCTTACCAAAGAGCTGGGCCACAAGTCGGATGGCGAAACCGTTGAGTGGCTCCTCCAGCAGGCCGAGCCGTCTGTTATCGCCGCCACGGGCACCGGCACCATCCCTGCGAATTTCACTTCGCTTAATATCTCCCTACGAAGCTCCGGCTCCACGATCTCTGCCCCTTCTCACCTCCGATCTGGCTATTTCAGTCCGACGCAGTTCGCTGTCAGGACGAGATCCGATGTTTGGGATAGGAATAACGGTCTTGTGGATGATTCCTCTACATTCTTGAATTTTAACTCCGCGAATTATGTCAACGCGTTCAAGCTTGATCATGGTGGGATTGATGTCAACGACGCGGGAAAGAAACGGCGTTCGGAGCAGTCGGAATCGTCGTCGGAGAATCCGATTGGGAATTATTTAGTTCAGTCGAGTACCGGGTCGATTCCTGCAAGTCACAGCACGTCGACGCCGACACCAGCAACATTTTGGATGGTGACGAATCCGAGTAATCCAGCGAGCGATCCGATGTGGGCATTCCCGTCGGTGAGTAGCAGCAGCATGTTCCGAGGGGCAACGGCGACGGCAAGCGCGGGTGGAGGAGGGTTTCATTTCATGAATCTTCCACCACCCATGGCTCTTATGCCAACTGCCCAACAGTTGGGATCCGGGATTGGTGGCGGTGGCAGTGGAGGCGGTCCGACAACCGACACTCACTTGGGGATGTTGGCGGCTCTCAGCGCTTATAGAACCATGCCGGGATTGTCAGTTTCGGAGTCTCCGGCGAGAGGAGCGGCGGCGATTCATCAAGGTGGAAATGAAGCTCATGATCATTCAACTTCTAATCGTGATCAATCATAA 1161 53.06 MINMDGENGIRRPNFPLQLLEKKEEHRQQQHPCSSSANNGAATTTTTTTTTTTSTLIQTNLESNSSSCLPKKPTPKRPPTKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETVEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRSGYFSPTQFAVRTRSDVWDRNNGLVDDSSTFLNFNSANYVNAFKLDHGGIDVNDAGKKRRSEQSESSSENPIGNYLVQSSTGSIPASHSTSTPTPATFWMVTNPSNPASDPMWAFPSVSSSSMFRGATATASAGGGGFHFMNLPPPMALMPTAQQLGSGIGGGGSGGGPTTDTHLGMLAALSAYRTMPGLSVSESPARGAAAIHQGGNEAHDHSTSNRDQS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40133483 40135487 + Sed0003260.1 Sed06g1538 718081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1538 386 MobiDBLite consensus disorder prediction 23 92 - -
Sed06g1538 386 ProSiteProfiles TCP domain profile. 80 134 IPR017887 -
Sed06g1538 386 MobiDBLite consensus disorder prediction 215 230 - -
Sed06g1538 386 MobiDBLite consensus disorder prediction 231 257 - -
Sed06g1538 386 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 45 358 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed06g1538 386 MobiDBLite consensus disorder prediction 215 257 - -
Sed06g1538 386 Pfam TCP family transcription factor 80 196 IPR017887 -
Sed06g1538 386 MobiDBLite consensus disorder prediction 31 71 - -
Sed06g1538 386 MobiDBLite consensus disorder prediction 357 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0269 Sed-Chr4:2009838 Sed06g1538 Sed-Chr6:40133483 2.70E-35 dispersed
Sed04g2781 Sed-Chr4:39860997 Sed06g1538 Sed-Chr6:40133483 3.10E-31 dispersed
Sed05g2821 Sed-Chr5:39450852 Sed06g1538 Sed-Chr6:40133483 6.40E-21 dispersed
Sed06g1538 Sed-Chr6:40133483 Sed07g2387 Sed-Chr7:39681351 3.40E-32 dispersed
Sed12g1943 Sed-Chr12:30515749 Sed06g1538 Sed-Chr6:40133483 9.80E-65 wgd
Sed06g1538 Sed-Chr6:40133483 Sed08g2057 Sed-Chr8:34836573 5.40E-46 wgd
Sed06g1538 Sed-Chr6:40133483 Sed08g0209 Sed-Chr8:1194138 6.50E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38895 PF03634 TCP 3.40E-36 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1538 - - - 0.0