Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1538 ATGATCAATATGGATGGTGAAAATGGAATCCGAAGACCTAATTTCCCCCTTCAATTGTTAGAGAAAAAAGAAGAACATCGCCAACAACAACACCCATGTTCCTCCTCCGCCAACAACGGAGCAGCAACAACAACGACGACAACAACAACAACGACAACATCAACACTCATACAGACAAATCTTGAATCTAATTCTTCCTCCTGTTTGCCCAAGAAGCCCACCCCGAAACGGCCCCCCACCAAAGACCGTCACACCAAAGTGGATGGCCGCGGCCGCCGCATCCGCATGCCTGCCCTATGTGCTGCTAGGGTTTTTCAGCTTACCAAAGAGCTGGGCCACAAGTCGGATGGCGAAACCGTTGAGTGGCTCCTCCAGCAGGCCGAGCCGTCTGTTATCGCCGCCACGGGCACCGGCACCATCCCTGCGAATTTCACTTCGCTTAATATCTCCCTACGAAGCTCCGGCTCCACGATCTCTGCCCCTTCTCACCTCCGATCTGGCTATTTCAGTCCGACGCAGTTCGCTGTCAGGACGAGATCCGATGTTTGGGATAGGAATAACGGTCTTGTGGATGATTCCTCTACATTCTTGAATTTTAACTCCGCGAATTATGTCAACGCGTTCAAGCTTGATCATGGTGGGATTGATGTCAACGACGCGGGAAAGAAACGGCGTTCGGAGCAGTCGGAATCGTCGTCGGAGAATCCGATTGGGAATTATTTAGTTCAGTCGAGTACCGGGTCGATTCCTGCAAGTCACAGCACGTCGACGCCGACACCAGCAACATTTTGGATGGTGACGAATCCGAGTAATCCAGCGAGCGATCCGATGTGGGCATTCCCGTCGGTGAGTAGCAGCAGCATGTTCCGAGGGGCAACGGCGACGGCAAGCGCGGGTGGAGGAGGGTTTCATTTCATGAATCTTCCACCACCCATGGCTCTTATGCCAACTGCCCAACAGTTGGGATCCGGGATTGGTGGCGGTGGCAGTGGAGGCGGTCCGACAACCGACACTCACTTGGGGATGTTGGCGGCTCTCAGCGCTTATAGAACCATGCCGGGATTGTCAGTTTCGGAGTCTCCGGCGAGAGGAGCGGCGGCGATTCATCAAGGTGGAAATGAAGCTCATGATCATTCAACTTCTAATCGTGATCAATCATAA 1161 53.06 MINMDGENGIRRPNFPLQLLEKKEEHRQQQHPCSSSANNGAATTTTTTTTTTTSTLIQTNLESNSSSCLPKKPTPKRPPTKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETVEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRSGYFSPTQFAVRTRSDVWDRNNGLVDDSSTFLNFNSANYVNAFKLDHGGIDVNDAGKKRRSEQSESSSENPIGNYLVQSSTGSIPASHSTSTPTPATFWMVTNPSNPASDPMWAFPSVSSSSMFRGATATASAGGGGFHFMNLPPPMALMPTAQQLGSGIGGGGSGGGPTTDTHLGMLAALSAYRTMPGLSVSESPARGAAAIHQGGNEAHDHSTSNRDQS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40133483 40135487 + Sed0003260.1 Sed06g1538 718081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1538 386 MobiDBLite consensus disorder prediction 23 92 - -
Sed06g1538 386 ProSiteProfiles TCP domain profile. 80 134 IPR017887 -
Sed06g1538 386 MobiDBLite consensus disorder prediction 215 230 - -
Sed06g1538 386 MobiDBLite consensus disorder prediction 231 257 - -
Sed06g1538 386 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 45 358 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed06g1538 386 MobiDBLite consensus disorder prediction 215 257 - -
Sed06g1538 386 Pfam TCP family transcription factor 80 196 IPR017887 -
Sed06g1538 386 MobiDBLite consensus disorder prediction 31 71 - -
Sed06g1538 386 MobiDBLite consensus disorder prediction 357 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1538 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0269 Sed-Chr4:2009838 Sed06g1538 Sed-Chr6:40133483 2.70E-35 dispersed
Sed04g2781 Sed-Chr4:39860997 Sed06g1538 Sed-Chr6:40133483 3.10E-31 dispersed
Sed05g2821 Sed-Chr5:39450852 Sed06g1538 Sed-Chr6:40133483 6.40E-21 dispersed
Sed06g1538 Sed-Chr6:40133483 Sed07g2387 Sed-Chr7:39681351 3.40E-32 dispersed
Sed12g1943 Sed-Chr12:30515749 Sed06g1538 Sed-Chr6:40133483 9.80E-65 wgd
Sed06g1538 Sed-Chr6:40133483 Sed08g2057 Sed-Chr8:34836573 5.40E-46 wgd
Sed06g1538 Sed-Chr6:40133483 Sed08g0209 Sed-Chr8:1194138 6.50E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2387 . 25 228 TCP Transcription Factor Family AT5G23280 63.8 1.1e-60 231.1
Sed04g2781 . 38 242 TCP Transcription Factor Family AT5G23280 58.0 1.4e-55 214.2
Sed03g0942 . 56 255 TCP Transcription Factor Family AT5G23280 59.0 4.1e-55 212.6
Sed04g2197 . 21 318 TCP Transcription Factor Family AT2G45680 52.3 1.4e-69 261.2
Sed06g1538 . 56 171 TCP Transcription Factor Family AT3G47620 78.8 1.7e-41 168.3
Sed08g2057 . 39 140 TCP Transcription Factor Family AT3G47620 81.4 1.1e-38 159.1
Sed08g1502 . 48 300 TCP Transcription Factor Family AT3G27010 55.4 4.5e-59 226.1
Sed06g0434 . 8 269 TCP Transcription Factor Family AT3G27010 53.9 6.5e-58 222.2
Sed07g2387 . 1 227 TCP Transcription Factor Family AT5G08330 58.4 1.2e-56 217.6
Sed03g0942 . 36 261 TCP Transcription Factor Family AT5G08330 58.3 1.6e-56 217.2
Sed04g2781 . 25 239 TCP Transcription Factor Family AT5G08330 56.1 5.1e-55 212.2
Sed13g0592 . 31 378 TCP Transcription Factor Family AT1G53230 52.9 3.6e-82 303.1
Sed06g0853 . 45 205 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g0854 . 43 203 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g1441 . 44 153 TCP Transcription Factor Family AT3G02150 70.2 2.5e-37 154.1
Sed04g1559 . 190 399 TCP Transcription Factor Family AT2G31070 50.5 3.7e-41 166.8
Sed13g0592 . 30 215 TCP Transcription Factor Family AT2G31070 53.9 4.1e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38895 PF03634 TCP 3.40E-36 No_clan Sed TF