Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1545 ATGACGAGCAATGGGATGGCGTTTTTTCCAGCAAATTTCATGCTACAAACTCCCCACGAAGATCACGATCACGATCATCATCATCATCATTCTTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTCCATGGAGTTGCATCCTTTCTAGGAAAACGATCCATGTCATTTTCAGGGGCAGAAATGGTGGAAGAAGGAAACAACGGTGAGGATGACTTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGGCTCAACATGGAGCAAGTGAAAACACTCGAGAAGAACTTCGAACTCGGAAACAAGCTCGAACCCGAGCGAAAAATGCAGCTGGCTCGAGCCCTCGGTCTGCAGCCTAGACAGATTGCTATTTGGTTTCAAAACAGAAGGGCTAGGTGGAAGACAAAGCAACTAGAGAAAGACTATGATCTTCTCAAGAGACAATTTGAATCTATCAAATCAGATAATGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACAGAATCAATCAATCTGAACAAAGAAACAGATCAAGGGTCAAGCAGCAACCGAAGTGAAAACAGCTCTGATAACATAAAATTAGACATGTCAAGAACACCAGCCATTGATAGCCCTCATCATCAGCAAATTACAAATAGGCCCTTTTTCCCCACTAATTCATTGAGGCCACCAGCTTTGGCTCAGCTCTTTCAAACCTCATCAAGATTGTCAGACCCACCAAAGCAAATTGAAAACACCAACAACAACAACAATCATCCTCAAATTGCTAAAGAAGAAACCACTAGCTTATCCAATATGTTTTGTGGAATGGATGATCACTCTGGTTTTTGGCCTTGGTTGGAGCACCAACATTTCAACTGA 918 42.81 MTSNGMAFFPANFMLQTPHEDHDHDHHHHHSSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFESIKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETDQGSSSNRSENSSDNIKLDMSRTPAIDSPHHQQITNRPFFPTNSLRPPALAQLFQTSSRLSDPPKQIENTNNNNNHPQIAKEETTSLSNMFCGMDDHSGFWPWLEHQHFN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40270934 40273198 + Sed0011691.1 Sed06g1545 718088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1545 305 Gene3D - 80 149 - -
Sed06g1545 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 66 267 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Sed06g1545 305 MobiDBLite consensus disorder prediction 17 32 - -
Sed06g1545 305 Pfam Homeobox associated leucine zipper 143 183 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g1545 305 SUPERFAMILY Homeodomain-like 77 145 IPR009057 -
Sed06g1545 305 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed06g1545 305 PRINTS Lambda-repressor HTH signature 114 123 IPR000047 GO:0003677(InterPro)
Sed06g1545 305 PRINTS Lambda-repressor HTH signature 123 139 IPR000047 GO:0003677(InterPro)
Sed06g1545 305 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677(InterPro)
Sed06g1545 305 Pfam Homeodomain 88 141 IPR001356 GO:0003677(InterPro)
Sed06g1545 305 CDD homeodomain 88 144 IPR001356 GO:0003677(InterPro)
Sed06g1545 305 MobiDBLite consensus disorder prediction 191 214 - -
Sed06g1545 305 Coils Coil 135 183 - -
Sed06g1545 305 MobiDBLite consensus disorder prediction 68 88 - -
Sed06g1545 305 MobiDBLite consensus disorder prediction 184 239 - -
Sed06g1545 305 MobiDBLite consensus disorder prediction 221 239 - -
Sed06g1545 305 MobiDBLite consensus disorder prediction 17 43 - -
Sed06g1545 305 FunFam Homeobox-leucine zipper protein ATHB-13 80 147 - -
Sed06g1545 305 SMART HOX_1 86 147 IPR001356 GO:0003677(InterPro)
Sed06g1545 305 MobiDBLite consensus disorder prediction 253 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0693 Sed-Chr4:5541415 Sed06g1545 Sed-Chr6:40270934 2.80E-93 dispersed
Sed06g1545 Sed-Chr6:40270934 Sed10g0840 Sed-Chr10:6194141 1.60E-24 dispersed
Sed11g1992 Sed-Chr11:34074679 Sed06g1545 Sed-Chr6:40270934 1.50E-48 wgd
Sed03g0193 Sed-Chr3:1194664 Sed06g1545 Sed-Chr6:40270934 1.40E-46 wgd
Sed04g0692 Sed-Chr4:5541415 Sed06g1545 Sed-Chr6:40270934 1.50E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38897 PF00046 Homeodomain 3.10E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1545 K09338 - csv:101221595 509.605