Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1558 ATGATTCTTCGTTTGCTGCTAGCATTGTCAGTCGTTGCCATGGCTTACGCCGACATTCTAGACTTCGACGAGTATTGGAAAATACGCGCCGTCGAGGCCCAACAAGCCGCTGCCAAGGCCTTTGATCCCAACCCTGAGAACGTCACCAGCTCCTTCAACGCCCATGTTGGCCAACTTTTGAGGGGAGTAAACAGCACGAGGAGGAATTTGAAGCATATGAGTAAATACAACGGGCCATGCAGAAGCACTAATCCCATTGATAACTGCTGGAGATGCGATCCAAACTGGGCCAGAAACCGCAAGAAGCTGGTCGATTGTGTTCAGGGTTTTGGTCGTAAGACCACGGGCGGCAAGTTGGGTCCATACTACGTGGTGAGCGATTCGTCGGACTCGGACCTCATGAACCCAAAGCCGGGGACTCTCCGCCACGCTGTGATCCAAAAGGGACCATTGTGGATCATCTTTTCAACCAACATGGCCATTAGGCTGAACCAGGAACTCATCATGACCAGCGATAAGACCATCGATGCTCGAGGCACCAATGTTCAGATTGCTTATGGGGCTGGCATTACAATTCAGTACATCAGCAATGTCATCATCCATGGCCTTCGTATTCATCACATCGTTGCTGGTTCCGGTGGAATGATCCGAGACTCTGTCGACCATGCGGGTTTGAGGACACAGAGTGACGGCGACGGCATTTCCATCTTCGGTTCCTCTAATGTTTGGATTGATCATGTTTCCATGTCCAAGTGCACCGACGGTCTCATCGATGCCATCATGGGATCCACTGGCATTACCATCTCCAATAGTCACTTTACTCACCATAATGATGTAATGTTGTTTGGAGCAAGCGACGGGTACTCGAATGATCAAATAATGCAAGTGACGGTGGCATTCAACCACTTCGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCATATCGTCAATAACGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAACATCCCACCATTGTTAGCCAGGGCAATCGCTTCATTGCTCCTCCTAATATCCACTCTAAAGAGGTGACGAAGAGGGAATACTCGCCCGAGGAGGTGTGGAAGAGCTGGACATGGAGATCGGAGGGAGACTTGATGATGAACGGAGCATTCTTTGTAAGATCCGGCGACCGAAGAAAGAAAAGGCCATTTTCAAGGATGGACATGATCTCATACAGAGCAGGAACTTATGTTACACGGATGACACGTTACGCAGGCGCGCTTCCATGTTTCTTAGGCCGACCATGCTAA 1302 50.0 MILRLLLALSVVAMAYADILDFDEYWKIRAVEAQQAAAKAFDPNPENVTSSFNAHVGQLLRGVNSTRRNLKHMSKYNGPCRSTNPIDNCWRCDPNWARNRKKLVDCVQGFGRKTTGGKLGPYYVVSDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLNQELIMTSDKTIDARGTNVQIAYGAGITIQYISNVIIHGLRIHHIVAGSGGMIRDSVDHAGLRTQSDGDGISIFGSSNVWIDHVSMSKCTDGLIDAIMGSTGITISNSHFTHHNDVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHIVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNIHSKEVTKREYSPEEVWKSWTWRSEGDLMMNGAFFVRSGDRRKKRPFSRMDMISYRAGTYVTRMTRYAGALPCFLGRPC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40394637 40397060 - Sed0011821.1 Sed06g1558 718101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1558 433 PRINTS Pollen allergen Amb family signature 404 427 IPR018082 -
Sed06g1558 433 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Sed06g1558 433 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Sed06g1558 433 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Sed06g1558 433 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Sed06g1558 433 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Sed06g1558 433 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Sed06g1558 433 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Sed06g1558 433 PANTHER PECTATE LYASE 18-RELATED 17 428 IPR045032 GO:0030570(InterPro)
Sed06g1558 433 Gene3D - 83 426 IPR012334 -
Sed06g1558 433 Pfam Pectate lyase 170 349 IPR002022 -
Sed06g1558 433 Pfam Pectate lyase, N terminus 19 70 IPR007524 GO:0030570(InterPro)
Sed06g1558 433 SMART amb_all 158 355 IPR002022 -
Sed06g1558 433 SUPERFAMILY Pectin lyase-like 84 424 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0605 Sed-Chr6:5374957 Sed06g1558 Sed-Chr6:40394637 1.70E-181 dispersed
Sed06g1558 Sed-Chr6:40394637 Sed08g1352 Sed-Chr8:28116850 2.90E-181 dispersed
Sed01g1830 Sed-Chr1:13466423 Sed06g1558 Sed-Chr6:40394637 1.00E-169 transposed
Sed06g1558 Sed-Chr6:40394637 Sed08g2039 Sed-Chr8:34637426 3.70E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1558 K01728 - csv:101206497 746.503