Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1559 ATGGAAGTAATCGCTGAAGATTTGAAAGTTGAGTCTCGGGTTGTGAGCGAATCGAAGGGGAAGAAGAAGCAGAAGAACAGCAAGGAACAGGTTGAACCTGTGGAAGAGGAGACTGGTTGTTGGATTGCTCTGAGGATTTTTGGGAGCTGCATTTCTTCGAGATCTAAAGTTGATAGTTCGATCAGTGGGACTAGTATTAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACACCTCGAGATATATCTTCTACAAACACAAGTATGAGTAATGCAGAGAGTATTTCATCCACTTCCAAACTTGAAGAGGAACTTAAAATTTCTCCTCATCTACGAAATTTTTCATTCAATGATCTTAAGTTGGCGACAAGGAACTTCAGACCGGAGAGTCTTCTTGGTGAGGGTGGTTTTGGTTGTGTTTTTAAGGGCTGGGTTGAAGAAAATGGAACTGCTCCTGTTAAACCTGGCACAGGACTCACTGTTGCTGTAAAAACCCTCAACCATGATGGTCTTCAGGGCCATAAAGAGTGGATGGCTGAAGTGAATTTTCTTGGTGATCTCAAACATCCCAACTTGGTCAAACTTGTTGGTTACTGCAATGAAGATGATCAAAGATTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCTTTACCTCTTCCGTGGTCTATTAGGATGAAAATTGCACTAGGTGCAGCCAAGGGTCTTGCTTTTCTCCACGAGGAAGCAAAAAGGCCGGTGATATATCGTGATTTTAAAACATCCAACATCCTATTAGATGCTGAATACAATGCCAAGCTCTCTGATTTTGGACTTGCAAAAGATGGACCCGATGGAGATAAAACCCATGTCTCTACTCGTGTGATGGGAACATATGGCTATGCAGCTCCAGAATACGTAATGACTGGACATCTTACATCAAGGAGTGATGTTTACAGTTTCGGAGTGGTTCTTCTCGAAATGTTAACTGGCAGAAGATCCATGGATAAAAACCGACCTAACGGTGAACATAACCTTGTGGAATGGGCGCGGCCATACCTAGGTGAGAAAAAGAGATTCTACCGCTTGATAGATCCTAGGCTTGAAGGCCATTTCTCCATAAAAGGTGCCCAAAAAGCAGTACAATTGGCTGCTCAATGCCTTAGCAGAGATCAAAAGATCAGACCCTTAATGAGTGAAGTGGTTGAAGCCTTGAAGCCTCTCCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCTGACCGCATCCGGTCTAGCCCAATGGCGAGAAACGGCTACCACGCAGCTGCAGGACCGGTTCCGAAGAACGGCCAGCAACTACGCAGCAATTCAATCGCCAATGGATCTCATGCTTCGCCATATCATCATCAGCAACCACACCCATCTCCAAAACCAAATGTCAAACCCTAA 1467 44.1 MEVIAEDLKVESRVVSESKGKKKQKNSKEQVEPVEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPRDISSTNTSMSNAESISSTSKLEEELKISPHLRNFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLKHPNLVKLVGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKIRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRIRSSPMARNGYHAAAGPVPKNGQQLRSNSIANGSHASPYHHQQPHPSPKPNVKP 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40402233 40406401 - Sed0024766.1 Sed06g1559 718102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1559 488 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1559 488 FunFam Serine/threonine-protein kinase BIK1 98 216 - -
Sed06g1559 488 SUPERFAMILY Protein kinase-like (PK-like) 107 411 IPR011009 -
Sed06g1559 488 Pfam Protein tyrosine and serine/threonine kinase 135 411 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1559 488 Gene3D Phosphorylase Kinase; domain 1 111 216 - -
Sed06g1559 488 MobiDBLite consensus disorder prediction 69 106 - -
Sed06g1559 488 SMART serkin_6 131 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1559 488 MobiDBLite consensus disorder prediction 69 103 - -
Sed06g1559 488 MobiDBLite consensus disorder prediction 455 475 - -
Sed06g1559 488 FunFam Probable serine/threonine-protein kinase PBL8 217 432 - -
Sed06g1559 488 CDD STKc_IRAK 137 414 - -
Sed06g1559 488 PANTHER OS01G0588500 PROTEIN-RELATED 94 415 IPR050823 -
Sed06g1559 488 MobiDBLite consensus disorder prediction 1 35 - -
Sed06g1559 488 Gene3D Transferase(Phosphotransferase) domain 1 217 433 - -
Sed06g1559 488 MobiDBLite consensus disorder prediction 443 488 - -
Sed06g1559 488 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524(InterPro)
Sed06g1559 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1559 Sed-Chr6:40402233 Sed06g1561 Sed-Chr6:40402233 6.10E-281 dispersed
Sed12g0326 Sed-Chr12:2029986 Sed06g1559 Sed-Chr6:40402233 1.80E-90 dispersed
Sed13g1171 Sed-Chr13:15483185 Sed06g1559 Sed-Chr6:40402233 5.50E-94 dispersed
Sed13g1920 Sed-Chr13:24136215 Sed06g1559 Sed-Chr6:40402233 1.20E-88 dispersed
Sed14g0576 Sed-Chr14:5740896 Sed06g1559 Sed-Chr6:40402233 2.60E-54 dispersed
Sed06g1559 Sed-Chr6:40402233 Sed06g1560 Sed-Chr6:40402233 6.10E-281 tandem
Sed11g1986 Sed-Chr11:34056097 Sed06g1559 Sed-Chr6:40402233 1.80E-200 wgd
Sed03g0192 Sed-Chr3:1185543 Sed06g1559 Sed-Chr6:40402233 1.10E-139 wgd
Sed04g0682 Sed-Chr4:5422110 Sed06g1559 Sed-Chr6:40402233 3.60E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79373 PF07714 PK_Tyr_Ser-Thr 2.90E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1559 - - - 0.0