Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1576 ATGGGGGTGGATTACTACAATCTGTTGAAGGTGAACAGAAATGCGAACGATGAAGATTTGAAGAGATCCTACAAGAGATTGGCTATGAAATGGCATCCGGATAAGAATCCTATCAACAAGAACGAAGCGGAGGCGAAGTTCAAGCAGATCTCTGAGGCTTATGATGTGTTGAGCGACGCTAAGAAGCGTCAGATCTACGATCTATACGGCGATGAAGCTCTCAAATCTGTTGATTTCTCTAATCCTTCGTTTTCGTATATCCCTCGCGACGCCGATGACATTTTCGCTGAGTTTTTCGGCGGCGGCGGTAGTGCTAAGAGCCAAGGGTTTAGGAATGGTACGGCGGAGGCTGGGAAACAGACGAGTAAGAAAGCAGCGCCGATTGAGAGCAAGTTGCTGTGTAGCTTGGAAGATCTTTACAAAGGTTCAAGGAGGAAGATGAGGATTTCTCGCACTGTGCCTGATGAATTCGGGAAGCCGAAAACTGTTGATGAAGTGTTAAAAATAGATATTAAGCCTGGATGGAAGAAGGGGACAAAGATCACTTTCCCAGAGAAAGGCAATCAAGAACCTGGCGTCGCTCCGGCGGATCTTATATTTATCATCCATGTGAAACCCCATCCTGTTTTTGAGAGAGATGGTAATGATTTGGTAGTCAATCAGAAAATACCTCTATTAGAAGCACTCACTGGAAAGACATTCAACATTACAACTCTGGATGGAAGAAATCTTACTACTGTCACTGATATCGTCAAACCGGGTCACGAGGTAGTGATTCAGAATGAAGGAATGCCCATCTCTAAAGAACCAAACAAGAAGGGCAACCTTAGAATCAAGTTCGATATCATTTTCCCATCAAAGCTTACTTTTGAACAGAAATCTGATCTAAGAAGGGCTTTGGGTGGTTCGAATTAA 915 43.83 MGVDYYNLLKVNRNANDEDLKRSYKRLAMKWHPDKNPINKNEAEAKFKQISEAYDVLSDAKKRQIYDLYGDEALKSVDFSNPSFSYIPRDADDIFAEFFGGGGSAKSQGFRNGTAEAGKQTSKKAAPIESKLLCSLEDLYKGSRRKMRISRTVPDEFGKPKTVDEVLKIDIKPGWKKGTKITFPEKGNQEPGVAPADLIFIIHVKPHPVFERDGNDLVVNQKIPLLEALTGKTFNITTLDGRNLTTVTDIVKPGHEVVIQNEGMPISKEPNKKGNLRIKFDIIFPSKLTFEQKSDLRRALGGSN 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40574388 40576734 - Sed0027841.1 Sed06g1576 718119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1576 304 PRINTS DnaJ domain signature 42 62 IPR001623 -
Sed06g1576 304 PRINTS DnaJ domain signature 62 81 IPR001623 -
Sed06g1576 304 PRINTS DnaJ domain signature 24 39 IPR001623 -
Sed06g1576 304 PRINTS DnaJ domain signature 6 24 IPR001623 -
Sed06g1576 304 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Sed06g1576 304 Pfam DnaJ C terminal domain 128 285 IPR002939 -
Sed06g1576 304 FunFam Dnaj homolog subfamily b member 124 205 - -
Sed06g1576 304 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 301 IPR051339 GO:0005829(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)|GO:0051087(PANTHER)
Sed06g1576 304 FunFam DnaJ subfamily B member 13 207 286 - -
Sed06g1576 304 Gene3D DnaJ domain 3 111 IPR036869 -
Sed06g1576 304 SMART dnaj_3 3 62 IPR001623 -
Sed06g1576 304 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Sed06g1576 304 CDD DnaJ 4 59 IPR001623 -
Sed06g1576 304 Pfam DnaJ domain 4 67 IPR001623 -
Sed06g1576 304 SUPERFAMILY HSP40/DnaJ peptide-binding domain 128 208 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Sed06g1576 304 Coils Coil 40 60 - -
Sed06g1576 304 SUPERFAMILY HSP40/DnaJ peptide-binding domain 209 294 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Sed06g1576 304 SUPERFAMILY Chaperone J-domain 3 104 IPR036869 -
Sed06g1576 304 Gene3D - 127 205 - -
Sed06g1576 304 Gene3D - 207 286 - -
Sed06g1576 304 CDD DnaJ_C 126 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1576 K09510 - - csv:101205643 548.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1576 Sed-Chr6:40574388 Sed13g2051 Sed-Chr13:25294596 3.10E-97 dispersed
Sed06g1576 Sed-Chr6:40574388 Sed08g2566 Sed-Chr8:38186678 1.80E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g837 . . . . . . . . Cmo04g01698 Cmo18g01210 . Cma18g01189 . Car18g01097 Sed06g1576 Cpe09g00141 Cpe01g01433 Bhi07g01633 Tan04g1134 Cmetu10g0412 Lac13g0266 Hepe10g1703 . . Cla05g02486 Cam05g2670 Cec05g2704 Cco05g2739 Clacu05g2672 Cmu05g2526 Cre05g2641 Cone13ag0986 Cone19ag0978 . . . Csa05g02400 Chy10g00962 Cme10g00464 . . . . . . . . . . . Cma04g01621 . Car04g01662 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009703 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 33