Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1580 ATGTCTTCTTTCACTGTTTCCGCCATTGTTGTGTTCTTCCTTTTTCCTCTGTTTTCTCTGAGCTTAACTTGTCCGCCATTCTCTTCCAAACCCATTTCTCCATTTTCCTCTGTTCTTGGTTATGGCCACCCTTCTTTTCAAATCAACTGCTCTTCTCCTCACTCTGTTCTTTCCATTAATGGGGTTTCCTTTTCTCTCTTGAGTTTCAACACTAATTCCACCACTCTCCTCATTTCCCCTCTTCCCATCCATAAATCCAACCGTACTTGTGTTCGTTTCTCTTCCATTCCTAGCCGTTCGATTAATCTCTCCGGCACCCCGTTTCGAATCTCCGATGGGTTTTGTTCTCGGCTCTCTGTTCTCGTCCCCTGTTCGCCTCCGCATCTTCCCAATTGCAGCCATTGTCCTTGGGAGTGCAGTCTTGTCAAGAAACCGGCTAATTTGTTTCATGGTTGTGGCGTTGAACGTGATTCGATCTCGGAGCAAGGTTGTCAAGGGGATGTTCTTGAGTATTTGGATTCAATTTTGAGATTTGGGATTGAAATCGAGTGGGATACAGATCAGGATCCTTACTTTAAGAAATGTAATGATTGTAAAGCGACAAATGGGGTTTGTGGCTTTAATTCTTCAGACCCAGATAGGGATTTTGTTTGCTATCATACTCAAACTCAATACACAAACCCTAACAAAATCGCGATTTTGTCCTCTGTTTTTGCGCTAATGTGTTTGTTGCTGGTTTTTGCGGCGGCGATGGCGTTTTCCCGGTCGAGATGGTTGAGATCCCTCGCCATTGAAGTTGACCCAACAACTCAATTTCTCAGTCGTCATCGTTCGCCAAATCTTCTCCCACCGGTTTTCCCTTACGAAGAACTCGAATCTGCAACGAATGGGTTCGACCCGAAGATGAAATTGGGTGCCGGCGGATTTGGGTCGGTTTATTTGGGTCAGCTCAACGACGGCCGATTAGTCGCCGTGAAGTATCTCCACAAGCACCACGCCGCCGCCACCGCCGCCCCTTCCAGTAAGGCTTTCTTCACGAAATCGTTCTGTAACGAAATCTTGATTCTGTCTTCGATTAACCACCCAAATCTCGTTAGGTTACATGGGTATTGCAGCGATCCAAGAGGGCTTATTCTTGTTTACGATTACGTCCCAAATGGGACACTCGCCGATCATCTTCACGGCTCAAAGATTAAGGGAATTTTGAATTGGGAAGTGAGGATTGAAATCGCACTGCAAATCGCCATGGCAATGGAGTATTTGCATTTCTCCGTTGTGCCGCCGATTGTTCACAGAGACATAACATCTTCCAACATTTTCGTGGAGAAAGATATGAGAATCAAAGTTGGGGATTTTGGGCTTTCGAGACTGTTGGTTTTTTCCGATACGACGTCGTCTTCATCTGGGTATGTCTCCACCGGACCTCAGGGCACTCCCGGTTACTTGGATCCGGATTACCACCGGTCGTTCCGGTTGACGGAGAAGAGTGACGTGTACAGCTTCGGAGTGGTGTTGTTGGAGCTGATTTCCGGTTTGAAAGCGGTGGATCAGAGCCGGGAAAGGAGAGAAATGGCGTTGGCGGATTTGGTTGTGTCTAAGATCCAGATGGGTCAGCTTCATCAGGTTGTGGACTCTGTTTTGGGCGTCGCCGGCGAGGTTATCGACGGCGTTGAGGCGGTGGCGGAGCTCGCTTTCCGGTGCGTGGCGGCGGATAAGGACGACCGCCCCGACGCCAAGGAGGTCGTGGAGGAGCTCCGGCGGATTCGGGATTGCTCACGTGGAGCTGTCCGGTCGTCGATTTCTAACGCCAGTGCTGACGTGGCTAGGAGTTGA 1833 48.88 MSSFTVSAIVVFFLFPLFSLSLTCPPFSSKPISPFSSVLGYGHPSFQINCSSPHSVLSINGVSFSLLSFNTNSTTLLISPLPIHKSNRTCVRFSSIPSRSINLSGTPFRISDGFCSRLSVLVPCSPPHLPNCSHCPWECSLVKKPANLFHGCGVERDSISEQGCQGDVLEYLDSILRFGIEIEWDTDQDPYFKKCNDCKATNGVCGFNSSDPDRDFVCYHTQTQYTNPNKIAILSSVFALMCLLLVFAAAMAFSRSRWLRSLAIEVDPTTQFLSRHRSPNLLPPVFPYEELESATNGFDPKMKLGAGGFGSVYLGQLNDGRLVAVKYLHKHHAAATAAPSSKAFFTKSFCNEILILSSINHPNLVRLHGYCSDPRGLILVYDYVPNGTLADHLHGSKIKGILNWEVRIEIALQIAMAMEYLHFSVVPPIVHRDITSSNIFVEKDMRIKVGDFGLSRLLVFSDTTSSSSGYVSTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLKAVDQSRERREMALADLVVSKIQMGQLHQVVDSVLGVAGEVIDGVEAVAELAFRCVAADKDDRPDAKEVVEELRRIRDCSRGAVRSSISNASADVARS 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40609572 40611404 + Sed0018964.1 Sed06g1580 718123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1580 610 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524(InterPro)
Sed06g1580 610 Gene3D Phosphorylase Kinase; domain 1 273 383 - -
Sed06g1580 610 CDD STKc_IRAK 304 588 - -
Sed06g1580 610 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 42 592 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Sed06g1580 610 ProSitePatterns Tyrosine protein kinases specific active-site signature. 429 441 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1580 610 FunFam Putative serine/threonine-protein kinase At1g18390 family 274 383 - -
Sed06g1580 610 Gene3D Transferase(Phosphotransferase) domain 1 384 605 - -
Sed06g1580 610 Pfam Protein kinase domain 301 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1580 610 ProSiteProfiles Protein kinase domain profile. 298 588 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1580 610 SUPERFAMILY Protein kinase-like (PK-like) 278 585 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1580 Sed-Chr6:40609572 Sed07g2108 Sed-Chr7:36577347 1.20E-71 dispersed
Sed06g1580 Sed-Chr6:40609572 Sed08g2196 Sed-Chr8:35825832 4.80E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79376 PF00069 Pkinase 5.60E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1580 - - - 0.0