Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1581 ATGGAAGAAGATGGGGTGAAATTGGTCAAATGGGGTTATGGAATCAGAACATCATCGGACGCTTGCATCTCCGCCATTAATGCGTTCTATGACCAGGTGCTTAGTTATGGGAGGAAGAGGTCTGTGATTTTGGAGGCGCCGGTTCATGACAAAGATTGTGTTCTTGCGAATGTTTTGGCTGCTCATTGTCTTTCATCCTCTGATCCTTTGCGAGTTCATCATCATCTTGTAGCAGCAAAGGACGGTCTGGATCGTGCAACCAAGTATGAGAAAGCGGTTTTTGATGCTATAAGTTATTTGATGTCCATGGACAGAGACGATAATGCTGCTCTTGAGCTGCACTTTGAGCTGCTTAATATTTTTCCAAAGGATCTGTTGTCTTTGAAAAGGGCTCAAGTGTTATGCTTTTACATGGGAAAGGCTGATTCTTCGTTGGCTTTGGTTCAACAGGTTTTACCCCAAAATCAAGAAGAAGATTTCATTTATGGCATGCTTGCTTTTCCTTTGTTGGAGCTTGGCTGCATGGAAGAGGCTGAAAAGGCTGCAAGAAGAGGCCTTGATATCAACATGAACGATGGTTGGGCACAGCATGCGTTATGCCATGTTCTTCAACATAGGTGTCATTTTAAAGAAGCGGTTGAGTTTATGGAAGCTTGCTCACCTTCATGGAGTGACTGTTTATCATTCATGGTGACACATAATTGGTGGCATGTGGCTCTCTGTTACCTGGAAGCCAATTCTCCTTTGAGTAAAATCCTTGAAATATATGACAACTACATATGGAAGGAGTTGGAGAAACCCGATGCTATGGGACCGGATGTATACTTGAATGCCCTTGGTCTGATGTTGCGGTTGTTTGTGCGTGGCGCATTGGATCCATGTGAGGGTCGTATGAACATATTGGTCAATGCTTTAACCGATAAAGCAAACTGGCATTTAGAGTGGCACTTTGACTTGTTGATATTATGGGCTTTGGCTACAACCGGAGAGGTTTCTGCAGCAGAAGAGTTGTTTAGCGGCTTGAAGTCTCGAATGTTGAGGATGCCGCCTAAGAAACGAGAAACGATGCAAAGAGGAATGCTGCTTGCAGAAGCTGTATACGAGTACGGTAAAGGAGGTTACGAACGCGCATTAGACTTGCTCGGTATGGATTTTGATGCAAATGATTGCAAGATGATTGGTGCATCAAATGAACAGCTCGACGTATTCAATGACGTATGGTACGATATTTTGATGAATACAGGACAGACAGCAAAGGCCATTGAAGCAATCAAGAAACAGATCGAAAATAGGGAAGGAGTCCCATATTTGTGGTGCCTTCTGGAGAAAGGGTACAGCAAAATTAGAAGGCCAGAAGAAGCTGCCATTGCCCGAGACAAAGCCGAGAGCTTGGAGAAGGCGCATTTTGACCGATTTCCATGA 1422 44.09 MEEDGVKLVKWGYGIRTSSDACISAINAFYDQVLSYGRKRSVILEAPVHDKDCVLANVLAAHCLSSSDPLRVHHHLVAAKDGLDRATKYEKAVFDAISYLMSMDRDDNAALELHFELLNIFPKDLLSLKRAQVLCFYMGKADSSLALVQQVLPQNQEEDFIYGMLAFPLLELGCMEEAEKAARRGLDINMNDGWAQHALCHVLQHRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVRGALDPCEGRMNILVNALTDKANWHLEWHFDLLILWALATTGEVSAAEELFSGLKSRMLRMPPKKRETMQRGMLLAEAVYEYGKGGYERALDLLGMDFDANDCKMIGASNEQLDVFNDVWYDILMNTGQTAKAIEAIKKQIENREGVPYLWCLLEKGYSKIRRPEEAAIARDKAESLEKAHFDRFP 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40611998 40616150 - Sed0020834.1 Sed06g1581 718124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1581 473 Gene3D Tetratricopeptide repeat domain 75 471 IPR011990 GO:0005515(InterPro)
Sed06g1581 473 SUPERFAMILY TPR-like 135 456 IPR011990 GO:0005515(InterPro)
Sed06g1581 473 CDD StaR_like 49 408 IPR033891 -
Sed06g1581 473 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 38 8 453 IPR033891 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1581 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g833 . . . . . . . . Cmo04g01693 . . . . . Sed06g1581 . Cpe01g01429 Bhi07g01638 Tan04g1140 Cmetu10g0296 . . . . Cla05g02491 Cam05g2676 Cec05g2710 Cco05g2745 Clacu05g2678 Cmu05g2533 Cre05g2647 . Cone19ag0982 . . Lsi04g00489 Csa05g02394 Chy10g00956 Cme10g00469 . . Bda07g01582 . Bpe11g01753 . . . . . . Cma04g01616 . Car04g01657 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007654 1 3 1 2 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 36