Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1588 ATGAGTGGATGGGATAGGGTTAGACCATCGGGTTCGAGATTTGGCCGCGCCAATTCTGCAATGCCTGAGCGATCCTCCTCTCCCGCCACGGTTCGGCTCGGCCGAGTCCAGCCGCAGGCTCCTGGACATCGCACCATCTTCTGCAATGATCGCGACGCGAATCTCCTTGTTAAATTCAAGGGGAATTCCGTATCGACGACTAAGTACAACTTCTTCACTTTCTTTCCCAAGGGGTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACAATTTCAATCTTATCCACCACACCCATCAGTCCTGTGCATCCAATTACAAATGTGGTCCCTTTAAGTCTGGTTCTACTCGTCTCTCTCATTAAAGAAGCATTTGAGGACTGGAAGCGATTCCAGAATGATATGGCAATCAATAATAATCCTGTAGACGTGCTGCAAAATCAAAAGTGGGAGAGCATTCCTTGGAAAAAGTTGCAGGTTGGAGACATTGTTAGGGTTCGGCAAGATGGGTTTTTTCCTGCTGATCTTCTTTTCCTTGCTAGTACAAATCCAGATGGTGTCTGTTACATTGAGACTGCTAACCTGGATGGGGAAACAAATTTGAAGATTAGAAAGGCCCTAGAAAAGACATGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTTACCGGCAATGCTATTATTCAGAAGCAAACATTACCTCTAAGTCCAAACCAACTTCTATTGCGAGGATGCAGTCTCAGGAACACTGAGTATATTGTTGGCGCTGTTATTTTTACAGGCCATGAAACTAAGGTTATGATGAATGCTATGAATGTTCCTTCTAAAAGAAGTACTCTTGAGAAAAAACTTGACAAACTTATACTTACTCTTTTTGCTACTCTCTTTATCATGTGTTTGATTGGAGCAATTGGCAGTGGCTTGTTTGTAAACCAAAAGTACTACTACTTAGCTCTTGATAAGGGTGGGGAAAACCAATTTAATCCTAGAAACCGATTTCTGGTTGTCGTTCTAACCATGTTTACCCTGATTACTCTGTACTCAACCATCATTCCTATTTCTCTTTATGTTTCCATTGAGATGATCAAATTTATTCAGTCGACACAATATATCAATAGGGATCTGAATATGTTTCATGCTGATAGCAATACCCCTGCATTGGCTAGAACTTCCAATTTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCAATCGGTGGAGAGATTTATGGCACTGGAATCACCGAAATAGAGAGAGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGAGCAAAGATCAGCAGGTGCTGTAAAAGAAAAGGGATTTAATTTTGATGACGCTAGGCTTATGAGAGGAGCGTGGAGAAATGAGCCCAACTCTGATCTCTGTAAGGAATTTTTCAGATGCCTTGCTATTTGCCATACCGTTCTCCCCGAGGGCAATGATACCCCTGAAAAGATCACATATCAAGCAGCATCACCTGATGAGGCTGCCTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACACCTACTACAATATATGTTCGTGAATCTCATGTTGAGAAGATGGGTAAAATCATGGATGTTTCTTATGAAATTCTCAACGTACTAGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTGGTGTGCCGTTATTCCGATGGTAGGCTTGTCTTGTACTGCAAGGGTGCTGACACCGTTATATATGAGAGGTTGGCTGGTGGAAATGATGATCTGAAGAATGTAACTAGGGATCATTTGGAGAAATTTGGATCATCCGGTTTGAGAACCCTATGCCTTGCTTATAGAGATTTGCATCCCGACATGTATGAAAGCTGGAATGAGAAATTCATTCAAGCTAAGTCTTCATTAAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAAAGACCTTATTTTGATTGGCTCTACTGCTATCGAAGATAAGCTTCAGGAAGGAGTACCAAACTGTATAAAGACACTTTCTAGAGCTGGTATCAAGATTTGGGTGCTAACGGGAGACAAGATGGAGACTGCTATTAATATAGCTTATGCTTGCAATTTAATAAACAATGATATGAAACAATTTATAATCAGTTCAGAAACAGATGCAATCCGAGAAGTTGAAAACAGGGGTGACCAAGTAGAACTTGCACGTTTTACTAGAGATGAAGTGAAAAAGGAATTGAAGAGATGTCTTGAGGAAGCGCAGGAGTGTTTACAATCCATGTCTCCACCAAAATTAGCACTTGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTATTTTACTAAATTTGAGCTTGAATTGTACTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAAAAAGCACAGGTGACAAGTCTGGTGAAGAAAGGTGCTCAAAAAATAACACTTGGTATTGGGGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCGTTGGAATAAGTGGGCAGGAGGGAATGCAAGCAGTGATGGCTAGTGATTTCGCTATTGCCCAGTTTCGCTTTCTCACAGATTTACTTCTCGTGCATGGACGATGGTCATATCATAGAATATGCAAGGTTGTCACATACTTCTTTTACAAGAATCTGACGTTCACTTTAACTCAGTTTTGGTTCACCTTTCAAACTGGATTTTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTGTACAATGTCATATTTACCGCCCTACCTGTAATAATCGTTGGACTATTCGACAAGGATGTCAATGCGGCCCTATCCAAAAAGTACCCCGAGCTCTACAAAGAGGGAATAAGAAATGCGTTTTTCAAGTGGAGAGTTGTGACAACTTGGGCCTTCTTTTCCGTCTACCAATCTTTAATCTTCTATTATTTTGTAACCGCTTCCAGTTCCAGCAGTCAGTCATCATCTGGCAAGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACATGCATTGTAGTGACTGTGAATTTGCGGCTGCTTATGATCTGCAATTCAATTACTAGGTGGCATTACATTACGGTTGGGGGAAGTATTTTAGCATGGTTCGTATTTATTTTCGTATATTCTGGTATTATGACACCGCAAGATAGGCAGGTTAGTTTTGTTGCCTTTTTGTTTGTTTTTATTTTTAATTTTTAA 3312 40.88 MSGWDRVRPSGSRFGRANSAMPERSSSPATVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNPVDVLQNQKWESIPWKKLQVGDIVRVRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNAIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFATLFIMCLIGAIGSGLFVNQKYYYLALDKGGENQFNPRNRFLVVVLTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINRDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGITEIERGIAEQNGLKVEEEQRSAGAVKEKGFNFDDARLMRGAWRNEPNSDLCKEFFRCLAICHTVLPEGNDTPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKIMDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVIYERLAGGNDDLKNVTRDHLEKFGSSGLRTLCLAYRDLHPDMYESWNEKFIQAKSSLRDREKKLDEVAELIEKDLILIGSTAIEDKLQEGVPNCIKTLSRAGIKIWVLTGDKMETAINIAYACNLINNDMKQFIISSETDAIREVENRGDQVELARFTRDEVKKELKRCLEEAQECLQSMSPPKLALVIDGKCLMYALDPSLRVILLNLSLNCTSVVCCRVSPLQKAQVTSLVKKGAQKITLGIGDGANDVSMIQAAHVGVGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYHRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVNAALSKKYPELYKEGIRNAFFKWRVVTTWAFFSVYQSLIFYYFVTASSSSSQSSSGKVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFVFIFVYSGIMTPQDRQVSFVAFLFVFIFNF 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40674301 40696594 + Sed0017384.2 Sed06g1588 718131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1588 1103 FunFam Phospholipid-transporting ATPase 120 289 - -
Sed06g1588 1103 Pfam Phospholipid-translocating ATPase N-terminal 46 110 IPR032631 -
Sed06g1588 1103 FunFam Phospholipid-transporting ATPase IC 419 431 - -
Sed06g1588 1103 Gene3D - 124 289 - -
Sed06g1588 1103 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Sed06g1588 1103 PRINTS P-type cation-transporting ATPase superfamily signature 854 873 - -
Sed06g1588 1103 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1081 IPR023298 -
Sed06g1588 1103 Pfam Cation transport ATPase (P-type) 518 615 - -
Sed06g1588 1103 SUPERFAMILY HAD-like 410 897 IPR036412 -
Sed06g1588 1103 FunFam Phospholipid-transporting ATPase 531 686 - -
Sed06g1588 1103 Gene3D - 687 894 IPR023214 -
Sed06g1588 1103 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 32 1089 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER)
Sed06g1588 1103 SFLD p-type atpase 404 905 IPR044492 -
Sed06g1588 1103 Gene3D - 533 686 IPR023299 GO:0000166(InterPro)
Sed06g1588 1103 SUPERFAMILY Calcium ATPase, transduction domain A 142 285 IPR008250 -
Sed06g1588 1103 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 429 692 IPR023299 GO:0000166(InterPro)
Sed06g1588 1103 NCBIfam HAD-IC family P-type ATPase 827 933 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed06g1588 1103 Pfam E1-E2 ATPase 141 329 - -
Sed06g1588 1103 CDD P-type_ATPase_APLT_Dnf-like 61 1014 - -
Sed06g1588 1103 Pfam Phospholipid-translocating P-type ATPase C-terminal 882 1092 IPR032630 -
Sed06g1588 1103 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Sed06g1588 1103 MobiDBLite consensus disorder prediction 1 32 - -
Sed06g1588 1103 Coils Coil 769 789 - -
Sed06g1588 1103 FunFam Phospholipid-transporting ATPase 687 894 - -
Sed06g1588 1103 SFLD C1.7: P-type atpase like 404 905 - -
Sed06g1588 1103 NCBIfam phospholipid-translocating P-type ATPase 59 1100 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0670 Sed-Chr4:5284410 Sed06g1588 Sed-Chr6:40674301 0.00E+00 dispersed
Sed06g1588 Sed-Chr6:40674301 Sed06g1842 Sed-Chr6:42821145 5.40E-269 dispersed
Sed06g1587 Sed-Chr6:40674301 Sed06g1588 Sed-Chr6:40674301 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1588 K14802 - csv:101207069 2039.23