Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1591 ATGAAAGTAACTATTTTCTTACTTTCTTCTTCTTCTTCTTCTCCGTCACTGCAATTCCGTGGAGTTCCAATTTCATCCCTCAGTGAAGTTACAGAGCGCCGAAGCCTTCTTCTAGGGATTCCCAAAATCGGCGATTCCGTTCGGAGTTTCCCCATTTACGTCGGAGCAATTTCTCTCTTCATCGTCCTCTTTCAACGACGATCCCACCAGGTTGATGGTTACTTTTTGCTGCCTATTCTTAGGGTATGGAAGTCTCTGTCAGAAGTGTCATGCTGCAGTTCTCTGGTTGTTGTTTATGATGGTATGTGTTTATTTCAAGTTGGTGATGGTGAGGTCGAACACGTGGAAACTAGTAAATTGATGCGGGGATCGCTCTATCAAGGAATTCTCAAATCTCGAAGTCAGACCTACTTGGCCAATCTATCTCTTCCATCAAATACTCAGGCTGTAATTTTGCAACCACTGGGGGAGAAGGGTATCGCTATAATTGGTGGCAACACAATAAGAGGTTTCACAACCTCTGATCAGAAGCTGGATGCTACTCAGTTAAAGTATTTGAATAATTTTGAGACAGCAGTAAATTTGACCTCGAAGGATAACTGA 603 42.79 MKVTIFLLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRRSHQVDGYFLLPILRVWKSLSEVSCCSSLVVVYDGMCLFQVGDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLSLPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQKLDATQLKYLNNFETAVNLTSKDN 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40709700 40714117 + Sed0022420.1 Sed06g1591 718134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1591 200 Pfam Cofactor assembly of complex C subunit B, CCB2/CCB4 82 177 IPR021325 -
Sed06g1591 200 PANTHER - 69 178 IPR044705 GO:0009507(PANTHER)|GO:0010190(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1591 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0664 Sed-Chr4:5250942 Sed06g1591 Sed-Chr6:40709700 8.50E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g805 . . . . . Bpe10g00816 . Bma15g00208 . . . . . . Sed06g1591 . . Bhi07g01653 Tan04g1159 Cmetu10g0789 . Hepe10g1687 . . Cla05g02501 Cam05g2685 Cec05g2718 Cco05g2753 Clacu05g2688 Cmu05g2542 Cre05g2657 . Cone19ag0997 . . Lsi04g00500 . Chy10g00948 Cme10g00478 Blo06g00858 . . . . . . . . . . Cma04g01607 . Car04g01649 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0067531 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1