Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1596 ATGGCTTTGCTTCATCTTCTTCATCCATGGCCGCCCCTTCTTCTCTTCTTTCTCTTCTTCTCTGTTTCCCCTGTTTCTTTCTCCCAATCCCCTCAAAATATCGAAACTTTTTACCCTTTCCCCATTAATTTTTCACCGCCGCCGCCGCCGACGTCATCTCCGTCGACGTCGACCAGGACCATTGTCACGGCGGTGGTTGTCACTGCAGTGGGTATGGCTCTGATTTCGACGCTGTTTTTCTTTTTCCTTCAGAAATATCTGATCAGAAGAAAACGAAAAACAGAGGAGTTGAATTCCGGCGCCAGTGAGGGTCCGGTTGCACAGCCGGCGGTTGCTCAGAATCAATTTTCGAAGCTTGATGGGAATCTCAAGGGGTTTATCTTGGATGAAGATGGGTTGGATGTGATTTATTGGAAGAGACTTGAAAAAAGAAAATCCAAGAACAGCTTTGATCGGCGTTATGGAGAAGGAAATGTTCAAGCAAATCGGAGCAAGAAGAATTCCGACCCTGTTCAAGAAATTCCTCTTCTTCGAGGAAAATCTTCGACTTCCCATGTTAAAATCTCGCCGGAAGACGAACAACCCAGCCGGATTACTCCTCCTCCGCCACCCCAGATTAACAACCCTCCGCCATTTTCTGCTAATTCTGTTCAGGCAGTTGTAACAGCGCAACCGCAACCGCCGCCGTCACAATTTCTCATGGCTGTTCCTAACAATAAAAGCTCTGTTTCACCACCGCCACCGCCGCCAATTCTGGCAAAGGCAGTTGCAAGTCCACCGCCGCCGCCACCTCCGATTCCAGCGAAGACCAATTCCGCAGCCCCGCCTCCTCCCCCTCCAATACCAATCAAGTCAAATCCCGCAGCTCCACCGCCGCCCAAGGCCGGCGGTTCCAAATTGCCGCTCCGGCCAGCACCTCAAAAACAGGGTAAATTCAATGGAGAATCTTCTTCAACGACAGCTGATCCTAATCAAGTCAAATTGAAGCCTCTGCATTGGGATAAAGTAAACACCGCAAATGCCGATCATTCCATGGTTTGGGACAAAATGCACGCCGGATCTTTCCAATTTGATGGGGATCTCATGGAAGCTCTGTTCGGCTCCGTCGCGGCCAACCGGAAATCTCCCCGGCGTGATTCTACCTCTTCATCAACGGCTGTCGGCCGGAACTCAGGCCCGTCGCAGATTTTCATCCTCGAACAAAAGAAATCACAGAACATAGCCATTATAGTCAAATCCTTGACAATTCCTCGCAATGAAATCCTTGATTCGCTCAACGAAGGGCAAGGCTTAGAAGCAGAGATTCTTGAAAAACTTACCAGAATTTCTCTAACCCAAGAAGAAATTTCTCAAATTCTTGCATTCAAAGGCGACCCCCAGAATCTTGCTGATGCTGAAACTTTCCTTTACCATGTTCTCAAATCGGTTCCATCTGCATTTACCCTCTTCAACGCCATGCTTTTCCGATTGAATTTCAGATCTGAGATTATGTTTCTCAAGGAATCTCTAGAAACTCTGGAATCAGCTTGCAAGGAGCTTAAGACTCGAGGGCTGTTCATGAAACTGCTCGAAGCAGTCCTCAAAGCCGGGAATCGATTGAATGCCGGAACTGCGAGAGGAAATGCCAGGGCTTTTAATCTTACAGCCCTCCGAAAGCTCTCCGATGTTCGAAGCGCGGATGGAAAAACGACTCTGCTTCACTTTGTGGTGCAAGAAGTGATCAGGGCAGAAGGGAAAAGGTGTGTTTTGAGCAGGAACAAGAGCTTAGACCGTAACACCAGCCTTGGAAGTAGCTCGGAAAATTCGACATCGAAAGAGGACCGAGTGAATGAATACATGATGTTGGGATTGCCAGTGGTGGGAGGACTCAGCGCAGAGTTCTCGAATGTAAAGAAAGCGGCAGCAATCGACTACGAGAGCTTCGCCAACACCGCACCATTGCTGACCGGCCGAACGGCAGAAATTCGGAAGCTGTTGACTCAAATTGGGAACAATGGAGGTGGATTTGGGAAGGAAATGAAGGGGTTTCTTGAAGGAGCAGAGGATGAGCTGAGGGTGGTGACGGAACAACAGAGTAAGGTGATGAAGTTAGTGATAAAGACAACAGAGTATTATCAAGCTGCAAATTCAAAAGATAAAGAAGCAAATAAGCTTCAATTCTTCATCATAGTTAAGGATTTTCTTCAAATGGTGGATCGGGTGTGTGTTGAAATTGCCAAAGATCTCCAGAAAAAGAGATCGTCGACGGTGAAATCGGGTTCGTCGCCGGTGAGATCGAAGGCCATCTTCCCTAACTTGCCGCCAAATTTTATGTCAGATAAGTCCAGAGGCAGTTCTAGTGATTCAGATGAATTCTGA 2358 47.75 MALLHLLHPWPPLLLFFLFFSVSPVSFSQSPQNIETFYPFPINFSPPPPPTSSPSTSTRTIVTAVVVTAVGMALISTLFFFFLQKYLIRRKRKTEELNSGASEGPVAQPAVAQNQFSKLDGNLKGFILDEDGLDVIYWKRLEKRKSKNSFDRRYGEGNVQANRSKKNSDPVQEIPLLRGKSSTSHVKISPEDEQPSRITPPPPPQINNPPPFSANSVQAVVTAQPQPPPSQFLMAVPNNKSSVSPPPPPPILAKAVASPPPPPPPIPAKTNSAAPPPPPPIPIKSNPAAPPPPKAGGSKLPLRPAPQKQGKFNGESSSTTADPNQVKLKPLHWDKVNTANADHSMVWDKMHAGSFQFDGDLMEALFGSVAANRKSPRRDSTSSSTAVGRNSGPSQIFILEQKKSQNIAIIVKSLTIPRNEILDSLNEGQGLEAEILEKLTRISLTQEEISQILAFKGDPQNLADAETFLYHVLKSVPSAFTLFNAMLFRLNFRSEIMFLKESLETLESACKELKTRGLFMKLLEAVLKAGNRLNAGTARGNARAFNLTALRKLSDVRSADGKTTLLHFVVQEVIRAEGKRCVLSRNKSLDRNTSLGSSSENSTSKEDRVNEYMMLGLPVVGGLSAEFSNVKKAAAIDYESFANTAPLLTGRTAEIRKLLTQIGNNGGGFGKEMKGFLEGAEDELRVVTEQQSKVMKLVIKTTEYYQAANSKDKEANKLQFFIIVKDFLQMVDRVCVEIAKDLQKKRSSTVKSGSSPVRSKAIFPNLPPNFMSDKSRGSSSDSDEF 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40779593 40782306 - Sed0001042.1 Sed06g1596 718139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1596 785 ProSiteProfiles Formin homology-2 (FH2) domain profile. 318 757 IPR015425 -
Sed06g1596 785 SMART it6_source 318 746 IPR015425 -
Sed06g1596 785 MobiDBLite consensus disorder prediction 195 210 - -
Sed06g1596 785 Gene3D Formin, FH2 domain 317 742 IPR042201 -
Sed06g1596 785 MobiDBLite consensus disorder prediction 147 327 - -
Sed06g1596 785 MobiDBLite consensus disorder prediction 241 299 - -
Sed06g1596 785 MobiDBLite consensus disorder prediction 310 325 - -
Sed06g1596 785 Coils Coil 496 516 - -
Sed06g1596 785 MobiDBLite consensus disorder prediction 211 240 - -
Sed06g1596 785 MobiDBLite consensus disorder prediction 371 390 - -
Sed06g1596 785 SUPERFAMILY Formin homology 2 domain (FH2 domain) 275 746 - -
Sed06g1596 785 PANTHER FORMIN-RELATED 24 782 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Sed06g1596 785 MobiDBLite consensus disorder prediction 374 390 - -
Sed06g1596 785 MobiDBLite consensus disorder prediction 747 785 - -
Sed06g1596 785 Pfam Formin Homology 2 Domain 321 731 IPR015425 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1596 Sed-Chr6:40779593 Sed08g1729 Sed-Chr8:32246919 1.50E-116 dispersed
Sed06g1596 Sed-Chr6:40779593 Sed07g2651 Sed-Chr7:41953739 1.20E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1596 K28090 - csv:101208197 930.628