Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1597 ATGTCCACACAATTCTCCCCTCCTTCAAATTTCATGGCTACAAACTCTGTTTTCTCCCGCCGGCGAAGGTCCGATCCGATCGACGGTCTGGATCGCTTCCCCGCCTCCGACTCCGACGTCCACGTCCTCGCCGTCGACGACAGCCTCGTCGACCGTACGGTGATTGAGCGCCTCCTCCGCCTCACCGCCTGCCGTGTTACTGCAGTGGATAGTGGAATCAGAGCTCTACAATATCTTGGATTGCACGATGAGACAAATTCTCAAGATGGGTTCGTTGGATTGAAGGTGGATATGATCATTACCGACTATTGTATGCCCGGAATGACCGGCTACGAATTGCTCAAGAAAATCAAGGAATCGTCAACTCTGAGAGAGATTCCGGTGGTGATAATGTCGTCGGAAAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCTGATGTGAAACGGCTCAGGGAATATATGGTGGGGGACGAAAAGACTGGAAATGAAAGCACCCGGATCAACAAAAGGAAGCTACCAGAGCCGTCGGATCCTCCTCCATCATCACCGTCCATTTCATCTGATTCCTCTCCACCATCCTCATCATCACCGTCAGATTCGCTCCCATCCACCCCATCATCATCTGAGCCGTCCTCTCCCACGTCCACTCTTCAATCGGACGGCTCCAAATGA 714 52.1 MSTQFSPPSNFMATNSVFSRRRRSDPIDGLDRFPASDSDVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLHDETNSQDGFVGLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKTGNESTRINKRKLPEPSDPPPSSPSISSDSSPPSSSSPSDSLPSTPSSSEPSSPTSTLQSDGSK 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40795287 40796882 - Sed0009403.1 Sed06g1597 718140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1597 237 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 225 IPR045279 GO:0009736(InterPro)
Sed06g1597 237 Pfam Response regulator receiver domain 42 161 IPR001789 GO:0000160(InterPro)
Sed06g1597 237 Gene3D - 40 195 - -
Sed06g1597 237 ProSiteProfiles Response regulatory domain profile. 41 169 IPR001789 GO:0000160(InterPro)
Sed06g1597 237 MobiDBLite consensus disorder prediction 172 187 - -
Sed06g1597 237 CDD REC_typeA_ARR 42 164 - -
Sed06g1597 237 MobiDBLite consensus disorder prediction 172 237 - -
Sed06g1597 237 SUPERFAMILY CheY-like 39 168 IPR011006 -
Sed06g1597 237 SMART REC_2 40 165 IPR001789 GO:0000160(InterPro)
Sed06g1597 237 MobiDBLite consensus disorder prediction 201 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1597 Sed-Chr6:40795287 Sed08g0172 Sed-Chr8:951671 4.60E-48 dispersed
Sed04g0660 Sed-Chr4:5217170 Sed06g1597 Sed-Chr6:40795287 8.10E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38900 PF00072 Response_reg 2.10E-21 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1597 K14492 - csv:101209506 322.783