Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1602 ATGGAGCTTTTTCTGTACTTTCTCATCATCATCACCACCTCCATTTCTGTGCCTCTGAAGCAGCTTGAAGCTTCCATCCACTGTTCCATTCAAACCAATCAAAGTTGTTCACTCCCACAACAAATCAAAAAGCTTGCCAATGATCCCACTACTTCAAATTGGATGAACACCATAAGGAGAAAAATCCATGAGAACCCGGAACTTGCTTTTGAGGAATTTCAAACCAGCAGCCTCATTAGAGGGGAGCTTGACAGTCTCGGTGTTTCTTATCGATGGCCCGTTGCTGGAACCGGCATCGTCGCTTCCCTCGGTTCTGGTTCTCCTCCCTTTGTTGCTTTAAGAGCAGATATGGATGCTTTGCCTATTCAGGAATTGGTGGAATGGGAGCATAAGAGCAAAGTGAAGAGGAAAATGCATGCTTGTAGTCATGATGCTCATGTTGCTATGCTTCTTGGCGCTACTAAGATTCTGCATCAACTGAGAGATGAATTACAGGGCACTGTTGTTCTTATATTTCAGCCAGCAGAGGAGAGGGGAGAAGGAGCAAAAGACATGATAAAAGAAGGTGTCCTTGATGGTGTTGAAGCTATATTCGGGCTTCATATTGTGCATAAATATCCGGTCGGCGTTGTCGCTTCACGTCCCGGCGAGTTTCTTGCGGGGTGTGGAAGCTTCAAAGCTAAGATTAAGGGGAAAGGGGGTCATGCAGCAAGTCCACAGCATTCAATTGATCCTGTTTTGGCAGCTTCAGCAGCAATTGTTAGTCTTCAAAACATAGTTTCAAGAGAGATTGACCCTTTAGATTCCCAGGTGGTATCTGTGGCCATGGTTCAAGCAGGAGATGCACTCAATGTCATCCCGGACTCGGCCACCATTTCCGGTACCTTCAGAGCTTTTAGCAAGAAGAGCTTCAATGCTCTCAGAGATAGGATTGAAGAGGTAACCCCCAAGTACAGGTTCTTTACACTTAACAGATGA 978 45.6 MELFLYFLIIITTSISVPLKQLEASIHCSIQTNQSCSLPQQIKKLANDPTTSNWMNTIRRKIHENPELAFEEFQTSSLIRGELDSLGVSYRWPVAGTGIVASLGSGSPPFVALRADMDALPIQELVEWEHKSKVKRKMHACSHDAHVAMLLGATKILHQLRDELQGTVVLIFQPAEERGEGAKDMIKEGVLDGVEAIFGLHIVHKYPVGVVASRPGEFLAGCGSFKAKIKGKGGHAASPQHSIDPVLAASAAIVSLQNIVSREIDPLDSQVVSVAMVQAGDALNVIPDSATISGTFRAFSKKSFNALRDRIEEVTPKYRFFTLNR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40846767 40849953 + Sed0015146.2 Sed06g1602 718145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1602 325 SUPERFAMILY Bacterial exopeptidase dimerisation domain 221 316 IPR036264 -
Sed06g1602 325 PANTHER PEPTIDASE M20 FAMILY MEMBER 28 315 IPR017439 GO:0005783(PANTHER)|GO:0009850(PANTHER)|GO:0010179(PANTHER)|GO:0016787(InterPro)|GO:0016787(PANTHER)
Sed06g1602 325 FunFam N-acetyldiaminopimelate deacetylase 220 319 - -
Sed06g1602 325 Pfam Peptidase family M20/M25/M40 112 220 IPR002933 GO:0016787(InterPro)
Sed06g1602 325 Pfam Peptidase dimerisation domain 221 314 IPR011650 -
Sed06g1602 325 Gene3D Zn peptidases 49 286 - -
Sed06g1602 325 SUPERFAMILY Zn-dependent exopeptidases 52 236 - -
Sed06g1602 325 NCBIfam amidohydrolase 56 315 IPR017439 GO:0016787(InterPro)
Sed06g1602 325 PIRSF Amidohydrol_AmhX 41 319 IPR017439 GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1602 K14664 - - csv:101208682 484.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1602 Sed-Chr6:40846767 Sed06g2200 Sed-Chr6:45721051 1.20E-102 dispersed
Sed06g1601 Sed-Chr6:40846767 Sed06g1602 Sed-Chr6:40846767 4.50E-174 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g786 . . . . . . . . . . . . . . Sed06g1602 . . Bhi07g01672 Tan04g1177 Cmetu10g1745 Lac13g0238 Hepe10g1675 . . Cla05g02511 Cam05g2695 Cec05g2729 Cco05g2763 Clacu05g2698 Cmu05g2552 Cre05g2667 . . . . Lsi04g00510 Csa05g02371 Chy10g00935 Cme10g00490 . . Bda07g01569 . Bpe11g01737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011718 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30