Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1605 ATGTCCGTATCGATTTCCAACTGCTTCTCCGATTTACTCTGCCAGGAGGATTCCTCCGGCGTCTTCTCCGGCGACTCGCCGGAATGTTCCTCCGACGTCGATTCTCCGGCGGAGGAATCCATCGCCGTCTTCATCAAGGACGAGCGCCACTTCGTCCCCGACTACGACTGTTTCTCACGCTTCCAATCTCCGCCGCTTGACGCCGCCGCGAGATTGGACTCTGTTGCTTGGATTCTTAGGGTTCAAGGCTATTACGGTTTTCAGCCGTTGACGGCGTATCTCTCCGTTAACTACTTGGATCGATTTCTTTGTTCACGCCGTTTGCCTCAAACTAATGGGTGGCCTTTGCAACTCCTCTCTGTTGCCTGCCTTTCATTGGCTGCTAAAATGGAGGAACCTCTTGTTCCTGCTTTACTGGATCTTCAGGTTGAGGGGGCCAAATATATATTTGAACCCAGAAAAATATGCAGGATGGAACTACTGGTGCTGAGGGTATTAGATTGGCGGCTGCGTTCCGTAACGCCGTTCAATTTCATCGCGTTCTTCGCTTGCAAGCTCAATCCATCCGGGGACTTCATCGGGTTTCTTATCTCGAGAGCAACAGAGATTATACTATCCAACATCCAAGAGGTAATCTTTCTGGAGTATTGGCCATCATGTATTGCTGCAGCAGCTTTGCTTTGTGCAGCAAATGAAGTCCCCAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCTGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGATTAATGCAAGAGATTGTGGTTGATAGTAGCGGGATCAACTCCCCCAAAATCCTTCCTCAGTTTAGAGTGACAATACGTACTAGAATGAGATCCAGCAACTTATCACCCAACAAGAGGAGAAAATTAAGATGA 915 48.2 MSVSISNCFSDLLCQEDSSGVFSGDSPECSSDVDSPAEESIAVFIKDERHFVPDYDCFSRFQSPPLDAAARLDSVAWILRVQGYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRKICRMELLVLRVLDWRLRSVTPFNFIAFFACKLNPSGDFIGFLISRATEIILSNIQEVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCCGLRKENIIGCYRLMQEIVVDSSGINSPKILPQFRVTIRTRMRSSNLSPNKRRKLR 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40862026 40867012 + Sed0020014.1 Sed06g1605 718148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1605 304 ProSitePatterns Cyclins signature. 71 102 IPR048258 -
Sed06g1605 304 Gene3D - 45 234 - -
Sed06g1605 304 SUPERFAMILY Cyclin-like 36 170 IPR036915 -
Sed06g1605 304 CDD CYCLIN_AtCycD-like_rpt2 173 263 - -
Sed06g1605 304 Pfam Cyclin, N-terminal domain 41 171 IPR006671 -
Sed06g1605 304 CDD CYCLIN_AtCycD-like_rpt1 70 168 - -
Sed06g1605 304 Gene3D - 54 171 - -
Sed06g1605 304 FunFam D2/4-type cyclin 54 171 - -
Sed06g1605 304 SUPERFAMILY Cyclin-like 156 268 IPR036915 -
Sed06g1605 304 PANTHER CYCLINS 38 266 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed06g1605 304 SMART cyclin_7 76 164 IPR013763 -
Sed06g1605 304 Pfam Cyclin, C-terminal domain 173 276 IPR004367 -
Sed06g1605 304 SMART Cyclin_C_2 173 298 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1605 Sed-Chr6:40862026 Sed11g0784 Sed-Chr11:14952378 2.20E-111 dispersed
Sed04g0653 Sed-Chr4:5135902 Sed06g1605 Sed-Chr6:40862026 3.10E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1605 K18810 - csv:101209417 531.561