Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g1624 | ATGACTGTTCCTGGAATTATTTCTGAAATGGATGATTATGGGAGCAATGACGGAGATTCGGAGTCTTCATCTGCGTTCCCTAAAAAAGATGGGCAATCTGGCAAATGGTGCTTCAGTTTAGACGAGGATTCCATTTTATTGCACATAAAGAATGGGTTTTCACCTGAAATGGAGACTATATATGTGGGTTCCCTCAAGGTTGAAATCGATGCCAGGGAACAGGAAGAGGTTGCTCAGATGCTGTTTGACAATTTTAACTATGTACCTACATTTCTACCTTATGATCTCCAGAAGAAATTTTATCTTGGGTTCTGCAAACAGCAGATATGGCCCTTATTCCATTACATGCTACCTATGTGCCCAGAGCACGGTGATCGCTTTGATCGGCTGCTTTGGCAAGCCTATGTTTCTGCAAATAAAATATTTGCTGACATGGTGATGGAAATCATCAATCCTGAAGAAGATTCTGTTTGGGTTCATTATTATCATTTAATGGTTCTCCCAACTTTTTTGAGGAACCCGTTTCCATCATCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATACTACGTGGCCTGCTAAACTGTGATTTGATTGGTTTTCATACGTTTGATTATGCTCGTCACTTCCTCTCTTGCTGCAGCAGAATGTTGGGCCTGGACTATGAATCTAGGCGGGGACATGTTGGACTAGATTATTATGGCCGCACGGTATATATCAAAATTCTTCCTGTAGGCATTCACATGGGTCGACTAGAGTCGTCAAAGAAATTCGAGATCAATTCGAGGGAAAAAAAATTAATTCTTGGTATTGATGACATGGATATTTTTAAGGGCATAAGCCTGAAGCTTCTCGCTGTTGAACAGCTTTTACGACAGCGACCTGAGTTGCGAGGCAAAATAGTTCTGGTTCAAATTGTGAATCCTGCAAGGGGTTCAGGGAAAGATGTACATGAAGCTCAAAAAGAAACCTACTTGGCTGCTGAAAGGATCAATGGAACTTATGGTTCAAATAACTACAAACCTGTCATTCTGATCGATCGCCCTGTTCCACGTTTTGAGAAGACTGCTTATTACGCATTAGCAGAATGCTGCATAGTGAGTGTTGTAAGGGATGGTATGAATTTGGTTCCATACAAGTATATTGTGTGTAGGCAAGGTACTCCTCTTATGGATGAGGCTATGGGATTACAAGTTGGTTCTCCTCGGACGAGTATGCTTGTCGTGTCTGAGTTTATTGGTTGCTCACCTTCTTTAAGTGGAGCTATCAGGGTGAACCCTTGGGACATTGATGCTGTTGCAGATGCCTTGGAATTGGCCATAACCATGTCGCAGTCAGAGAAGCAGTTGGGGCATGAGAAACATTATCGATATGTCAGTTCACATGATATAGGATATTGGTCTCGAAGTTTTATGCAGGATTTAGAGAGGGCATGTCATGATCACTATCGTAAACGGTGCTGGGGAATTGGCTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCAGGGTTTAGGAAGTTAACTATGGATCACATTGTCTCAGCTTATAAGAGAACACTTAGAAGGGCGATATTTTTGGATTACAATGGCACTATTATTTCACAAAGCTCCATAAATAAGACACCGAGCCGAGAAGTTATCTCTGTGTTGACTACTCTTTGCAATGATCCATGTAACACTGTGTTCATTGTTAGTGGGAGAGGGAGAAGTTCTTTAGGTGAATGGTTTGCCTCTTGTGAGATGTTGGGGATTGCAGCAGAACATGGGCACTTTATAAGGTGGGGTGGAACTTCAGAATGGGAAACCAGTCCTTTATCTTCTGATCTGGATTGGATTAAAATTGTAGAGCCAGTGATGAGATCATATACAGAACCAACTGATGGGTCGTGCATAGAACCGAAAGAGAGTGCTTTAGTCTGGCATCATCAAGATGCTGATTCCGACTTCGGATCCTGTCAAGCTAAGGAATTGCTGGACCATCTCGAAAACGTACTTGCTAACGAACCCGCAGTTGTTAAAAGGGGTCAACACATTGTTGAAGGAGTAAGCAAAGGGTTGGTCACAGAAAAGGTTCTCTCAAGAATGGTAGATAGTGGAAGACCACCCGATTTCGTGATGTGCATCGGAGATGATAGATCAGATGAAGATATGTTTGAGAGCATATTAAACACCGTCTCTAGTTCTTCATTGCCTTCCGTTCCAGAAATTTTTTCCTACACTGTTGGGCGAAAGCCAAGCAAGGCGAAGTTTTACCTCGACGACACTTCCAACGTCGTGAAACTGCTGCAATGCCTTGCCTCTTCGTCACGTCCAAGACCACGTCAACTACCCCAAATGCGTGTATCTTTCGAGAGTGTCTTTTGA | 2370 | 42.62 | MTVPGIISEMDDYGSNDGDSESSSAFPKKDGQSGKWCFSLDEDSILLHIKNGFSPEMETIYVGSLKVEIDAREQEEVAQMLFDNFNYVPTFLPYDLQKKFYLGFCKQQIWPLFHYMLPMCPEHGDRFDRLLWQAYVSANKIFADMVMEIINPEEDSVWVHYYHLMVLPTFLRNPFPSSEIYRTLPVRDEILRGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESRRGHVGLDYYGRTVYIKILPVGIHMGRLESSKKFEINSREKKLILGIDDMDIFKGISLKLLAVEQLLRQRPELRGKIVLVQIVNPARGSGKDVHEAQKETYLAAERINGTYGSNNYKPVILIDRPVPRFEKTAYYALAECCIVSVVRDGMNLVPYKYIVCRQGTPLMDEAMGLQVGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAITMSQSEKQLGHEKHYRYVSSHDIGYWSRSFMQDLERACHDHYRKRCWGIGLGLRFRVVSLSPGFRKLTMDHIVSAYKRTLRRAIFLDYNGTIISQSSINKTPSREVISVLTTLCNDPCNTVFIVSGRGRSSLGEWFASCEMLGIAAEHGHFIRWGGTSEWETSPLSSDLDWIKIVEPVMRSYTEPTDGSCIEPKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQHIVEGVSKGLVTEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILNTVSSSSLPSVPEIFSYTVGRKPSKAKFYLDDTSNVVKLLQCLASSSRPRPRQLPQMRVSFESVF | 789 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 41020601 | 41023276 | - | Sed0013096.1 | Sed06g1624 | 718167 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g1624 | 789 | MobiDBLite | consensus disorder prediction | 10 | 33 | - | - | |
Sed06g1624 | 789 | CDD | GT20_TPS | 51 | 477 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Sed06g1624 | 789 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 653 | 780 | - | - | |
Sed06g1624 | 789 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 49 | 480 | - | - | |
Sed06g1624 | 789 | FunFam | Trehalose-6-phosphate synthase 2 | 607 | 685 | - | - | |
Sed06g1624 | 789 | NCBIfam | HAD-IIB family hydrolase | 525 | 722 | IPR006379 | - | |
Sed06g1624 | 789 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 253 | 461 | - | - | |
Sed06g1624 | 789 | FunFam | Trehalose-6-phosphate synthase 8 | 24 | 252 | - | - | |
Sed06g1624 | 789 | Pfam | Glycosyltransferase family 20 | 29 | 477 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Sed06g1624 | 789 | Pfam | Trehalose-phosphatase | 527 | 758 | IPR003337 | GO:0005992(InterPro) | |
Sed06g1624 | 789 | NCBIfam | trehalose-phosphatase | 523 | 768 | IPR003337 | GO:0005992(InterPro) | |
Sed06g1624 | 789 | SUPERFAMILY | HAD-like | 524 | 768 | IPR036412 | - | |
Sed06g1624 | 789 | Gene3D | Glycogen Phosphorylase B; | 36 | 255 | - | - | |
Sed06g1624 | 789 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 32 | 769 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER) | |
Sed06g1624 | 789 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 523 | 640 | - | - | |
Sed06g1624 | 789 | CDD | HAD_TPP | 525 | 762 | - | - | |
Sed06g1624 | 789 | Gene3D | - | 523 | 650 | IPR023214 | - | |
Sed06g1624 | 789 | Gene3D | - | 652 | 777 | IPR023214 | - | |
Sed06g1624 | 789 | Gene3D | Glycogen Phosphorylase B; | 256 | 461 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0642 | Sed-Chr4:4978685 | Sed06g1624 | Sed-Chr6:41020601 | 0.00E+00 | dispersed | |
Sed04g0643 | Sed-Chr4:4978685 | Sed06g1624 | Sed-Chr6:41020601 | 0.00E+00 | dispersed | |
Sed06g1624 | Sed-Chr6:41020601 | Sed08g0139 | Sed-Chr8:799337 | 0.00E+00 | dispersed | |
Sed04g0641 | Sed-Chr4:4978685 | Sed06g1624 | Sed-Chr6:41020601 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g1624 | K16055 | - | csv:101212688 | 1444.1 |