Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1624 ATGACTGTTCCTGGAATTATTTCTGAAATGGATGATTATGGGAGCAATGACGGAGATTCGGAGTCTTCATCTGCGTTCCCTAAAAAAGATGGGCAATCTGGCAAATGGTGCTTCAGTTTAGACGAGGATTCCATTTTATTGCACATAAAGAATGGGTTTTCACCTGAAATGGAGACTATATATGTGGGTTCCCTCAAGGTTGAAATCGATGCCAGGGAACAGGAAGAGGTTGCTCAGATGCTGTTTGACAATTTTAACTATGTACCTACATTTCTACCTTATGATCTCCAGAAGAAATTTTATCTTGGGTTCTGCAAACAGCAGATATGGCCCTTATTCCATTACATGCTACCTATGTGCCCAGAGCACGGTGATCGCTTTGATCGGCTGCTTTGGCAAGCCTATGTTTCTGCAAATAAAATATTTGCTGACATGGTGATGGAAATCATCAATCCTGAAGAAGATTCTGTTTGGGTTCATTATTATCATTTAATGGTTCTCCCAACTTTTTTGAGGAACCCGTTTCCATCATCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATACTACGTGGCCTGCTAAACTGTGATTTGATTGGTTTTCATACGTTTGATTATGCTCGTCACTTCCTCTCTTGCTGCAGCAGAATGTTGGGCCTGGACTATGAATCTAGGCGGGGACATGTTGGACTAGATTATTATGGCCGCACGGTATATATCAAAATTCTTCCTGTAGGCATTCACATGGGTCGACTAGAGTCGTCAAAGAAATTCGAGATCAATTCGAGGGAAAAAAAATTAATTCTTGGTATTGATGACATGGATATTTTTAAGGGCATAAGCCTGAAGCTTCTCGCTGTTGAACAGCTTTTACGACAGCGACCTGAGTTGCGAGGCAAAATAGTTCTGGTTCAAATTGTGAATCCTGCAAGGGGTTCAGGGAAAGATGTACATGAAGCTCAAAAAGAAACCTACTTGGCTGCTGAAAGGATCAATGGAACTTATGGTTCAAATAACTACAAACCTGTCATTCTGATCGATCGCCCTGTTCCACGTTTTGAGAAGACTGCTTATTACGCATTAGCAGAATGCTGCATAGTGAGTGTTGTAAGGGATGGTATGAATTTGGTTCCATACAAGTATATTGTGTGTAGGCAAGGTACTCCTCTTATGGATGAGGCTATGGGATTACAAGTTGGTTCTCCTCGGACGAGTATGCTTGTCGTGTCTGAGTTTATTGGTTGCTCACCTTCTTTAAGTGGAGCTATCAGGGTGAACCCTTGGGACATTGATGCTGTTGCAGATGCCTTGGAATTGGCCATAACCATGTCGCAGTCAGAGAAGCAGTTGGGGCATGAGAAACATTATCGATATGTCAGTTCACATGATATAGGATATTGGTCTCGAAGTTTTATGCAGGATTTAGAGAGGGCATGTCATGATCACTATCGTAAACGGTGCTGGGGAATTGGCTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCAGGGTTTAGGAAGTTAACTATGGATCACATTGTCTCAGCTTATAAGAGAACACTTAGAAGGGCGATATTTTTGGATTACAATGGCACTATTATTTCACAAAGCTCCATAAATAAGACACCGAGCCGAGAAGTTATCTCTGTGTTGACTACTCTTTGCAATGATCCATGTAACACTGTGTTCATTGTTAGTGGGAGAGGGAGAAGTTCTTTAGGTGAATGGTTTGCCTCTTGTGAGATGTTGGGGATTGCAGCAGAACATGGGCACTTTATAAGGTGGGGTGGAACTTCAGAATGGGAAACCAGTCCTTTATCTTCTGATCTGGATTGGATTAAAATTGTAGAGCCAGTGATGAGATCATATACAGAACCAACTGATGGGTCGTGCATAGAACCGAAAGAGAGTGCTTTAGTCTGGCATCATCAAGATGCTGATTCCGACTTCGGATCCTGTCAAGCTAAGGAATTGCTGGACCATCTCGAAAACGTACTTGCTAACGAACCCGCAGTTGTTAAAAGGGGTCAACACATTGTTGAAGGAGTAAGCAAAGGGTTGGTCACAGAAAAGGTTCTCTCAAGAATGGTAGATAGTGGAAGACCACCCGATTTCGTGATGTGCATCGGAGATGATAGATCAGATGAAGATATGTTTGAGAGCATATTAAACACCGTCTCTAGTTCTTCATTGCCTTCCGTTCCAGAAATTTTTTCCTACACTGTTGGGCGAAAGCCAAGCAAGGCGAAGTTTTACCTCGACGACACTTCCAACGTCGTGAAACTGCTGCAATGCCTTGCCTCTTCGTCACGTCCAAGACCACGTCAACTACCCCAAATGCGTGTATCTTTCGAGAGTGTCTTTTGA 2370 42.62 MTVPGIISEMDDYGSNDGDSESSSAFPKKDGQSGKWCFSLDEDSILLHIKNGFSPEMETIYVGSLKVEIDAREQEEVAQMLFDNFNYVPTFLPYDLQKKFYLGFCKQQIWPLFHYMLPMCPEHGDRFDRLLWQAYVSANKIFADMVMEIINPEEDSVWVHYYHLMVLPTFLRNPFPSSEIYRTLPVRDEILRGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESRRGHVGLDYYGRTVYIKILPVGIHMGRLESSKKFEINSREKKLILGIDDMDIFKGISLKLLAVEQLLRQRPELRGKIVLVQIVNPARGSGKDVHEAQKETYLAAERINGTYGSNNYKPVILIDRPVPRFEKTAYYALAECCIVSVVRDGMNLVPYKYIVCRQGTPLMDEAMGLQVGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAITMSQSEKQLGHEKHYRYVSSHDIGYWSRSFMQDLERACHDHYRKRCWGIGLGLRFRVVSLSPGFRKLTMDHIVSAYKRTLRRAIFLDYNGTIISQSSINKTPSREVISVLTTLCNDPCNTVFIVSGRGRSSLGEWFASCEMLGIAAEHGHFIRWGGTSEWETSPLSSDLDWIKIVEPVMRSYTEPTDGSCIEPKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQHIVEGVSKGLVTEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILNTVSSSSLPSVPEIFSYTVGRKPSKAKFYLDDTSNVVKLLQCLASSSRPRPRQLPQMRVSFESVF 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41020601 41023276 - Sed0013096.1 Sed06g1624 718167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1624 789 MobiDBLite consensus disorder prediction 10 33 - -
Sed06g1624 789 CDD GT20_TPS 51 477 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed06g1624 789 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 653 780 - -
Sed06g1624 789 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 49 480 - -
Sed06g1624 789 FunFam Trehalose-6-phosphate synthase 2 607 685 - -
Sed06g1624 789 NCBIfam HAD-IIB family hydrolase 525 722 IPR006379 -
Sed06g1624 789 FunFam Alpha,alpha-trehalose-phosphate synthase 253 461 - -
Sed06g1624 789 FunFam Trehalose-6-phosphate synthase 8 24 252 - -
Sed06g1624 789 Pfam Glycosyltransferase family 20 29 477 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed06g1624 789 Pfam Trehalose-phosphatase 527 758 IPR003337 GO:0005992(InterPro)
Sed06g1624 789 NCBIfam trehalose-phosphatase 523 768 IPR003337 GO:0005992(InterPro)
Sed06g1624 789 SUPERFAMILY HAD-like 524 768 IPR036412 -
Sed06g1624 789 Gene3D Glycogen Phosphorylase B; 36 255 - -
Sed06g1624 789 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 32 769 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Sed06g1624 789 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 523 640 - -
Sed06g1624 789 CDD HAD_TPP 525 762 - -
Sed06g1624 789 Gene3D - 523 650 IPR023214 -
Sed06g1624 789 Gene3D - 652 777 IPR023214 -
Sed06g1624 789 Gene3D Glycogen Phosphorylase B; 256 461 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0642 Sed-Chr4:4978685 Sed06g1624 Sed-Chr6:41020601 0.00E+00 dispersed
Sed04g0643 Sed-Chr4:4978685 Sed06g1624 Sed-Chr6:41020601 0.00E+00 dispersed
Sed06g1624 Sed-Chr6:41020601 Sed08g0139 Sed-Chr8:799337 0.00E+00 dispersed
Sed04g0641 Sed-Chr4:4978685 Sed06g1624 Sed-Chr6:41020601 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1624 K16055 - csv:101212688 1444.1