Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1627 ATGATTGGCTTCTTGTTTGCTCCGATAGTGACAGTGTGGCTATTCTGTATCGGTGCCATTGGCTTGTACAATATTATTCACTGGAATCCGGGTGTTTATAGAGCAATTAATCCTCGTTACATGTTTAAATTTCTTAAGAAAACACAAAAAGGAGGTTGGATGTCACTTGGTGGAATTATGCTGTGCATTACTGGTTCGGAGGCAATGTTTGCTGACCTTGGGCATTTTTCACAGTTGTCAATTAAGATTGCTTTCTCTTTTATGGTTTATCCGTCTCTCCTCCTAGCATACATGGGGCAAGCTGCCTATCTTTCTCTAAATTATACCACTCCAAATGACCATCGAATCGGGTTTTATGTATCTGTACCTGAAAAACTGAGGTGGCCTGTTCTTATAATTGCCGTGCTTGCTGCCGTAGTAGGAAGCCAGGCTATAATCACCGGAACTTTCTCGATTATAAAGCAGTGCTCTGCTTTGGGTTGCTTTCCCCGAGTCAAAATTGTCCATACATCCTCGAAAGTTCACGGTCGGATTTATATCCCGGAGATTAATTGGATTTTAATGCTGCTGTGCTTGGCTGTTACCATAGGTTTCAGAGATACAAAGCGCTTGGGTCATGCCTCAGGTTTGGCCGTGATCACTGTGATGCTCGTTACTACGTGCTTAATGTCCCTCATTATCGTCCTGTGCTGGCACCGAAGTGTATTTTTTGCCATAGGCTTCATCTTCTTCTTTGGCACCATTGAATCTCTGTATTTCTCAGCTTCTCTTATCAAATTTCTGGAAGGAGCTTGGGTTCCAATTGCAATATCTGTTGTCCTCATGATCGTGATGTATGTCTGGCACTATGGTACTCTTAAGAAGTTTGAATTTGACATGCAAAATAAGGTTTCTATTAACTGGCTACTTGGTTTGGGTCCAAGCCTAGGCATCGTAAGAGTACGTGGCATTGGTGTTATACAGACGGAGCTCGTTTTGGGAATCCCTGGTATCTTCACCCACTTTGTCACCAATATTCCTGCCTTCCATCAAGTTCTTGTTTTCCTTTGCATCAAATACATCCCGGTGCCACATGTTAGACCAGAGGAACGGTTTCTAATCGGTCGTATTGGTACGAGTGAATATAGACTCTATAGGTGCATTGTGCGATATGGTTATCGGGATGTTCACAAAGACGACGTAGAGTTCGAAAATGACCTTATATGCAGCATAGCAGAGTTTATAAGGTCAGCTAGTGCAGAGTCTAGTGGTTCTAAACCGGGCTTCGACAAAGATGGTGAAAAGATGACGGTCTTCGGGACATCTTCTACCCATGAAGATAGAATCCAGTTGGCTGAGACCGATAAAAACGAAGACTCGGAAGAACTGTACAGAGCTTCAGATAAAAGGGAAATAAGGTCACCAACGCCAGTTAGAAAAAGAGTACGTTTCATCATACCCGAAAGCCCGAAAATCGACACGGATACAACTGCAGAACTACAAGAGCTAATGGAAGCAAGAGAAGGAGGAGTAGCTTACATATTAGGACGGTCACACATGAAAGCAAAACAAGGATCGAGCACGCTGAAACGCGTGTCGATCAACTTCGTTTACGAGTTCTTGAGGAAGAACAGCAGAGAAGCTAACTACCCTGTAGGTTTATCACACACATCATCAGCCCTTGAGGTGGGTATGATGTATCTTGTTTAG 1689 43.22 MIGFLFAPIVTVWLFCIGAIGLYNIIHWNPGVYRAINPRYMFKFLKKTQKGGWMSLGGIMLCITGSEAMFADLGHFSQLSIKIAFSFMVYPSLLLAYMGQAAYLSLNYTTPNDHRIGFYVSVPEKLRWPVLIIAVLAAVVGSQAIITGTFSIIKQCSALGCFPRVKIVHTSSKVHGRIYIPEINWILMLLCLAVTIGFRDTKRLGHASGLAVITVMLVTTCLMSLIIVLCWHRSVFFAIGFIFFFGTIESLYFSASLIKFLEGAWVPIAISVVLMIVMYVWHYGTLKKFEFDMQNKVSINWLLGLGPSLGIVRVRGIGVIQTELVLGIPGIFTHFVTNIPAFHQVLVFLCIKYIPVPHVRPEERFLIGRIGTSEYRLYRCIVRYGYRDVHKDDVEFENDLICSIAEFIRSASAESSGSKPGFDKDGEKMTVFGTSSTHEDRIQLAETDKNEDSEELYRASDKREIRSPTPVRKRVRFIIPESPKIDTDTTAELQELMEAREGGVAYILGRSHMKAKQGSSTLKRVSINFVYEFLRKNSREANYPVGLSHTSSALEVGMMYLV 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41035090 41040529 - Sed0022667.3 Sed06g1627 718170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1627 562 NCBIfam potassium uptake protein 1 560 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed06g1627 562 Pfam K+ potassium transporter C-terminal domain 316 557 IPR053952 -
Sed06g1627 562 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 2 561 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed06g1627 562 MobiDBLite consensus disorder prediction 441 458 - -
Sed06g1627 562 Pfam K+ potassium transporter integral membrane domain 2 302 IPR053951 -
Sed06g1627 562 MobiDBLite consensus disorder prediction 436 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1625 Sed-Chr6:41035090 Sed06g1627 Sed-Chr6:41035090 0.00E+00 dispersed
Sed06g1627 Sed-Chr6:41035090 Sed11g1933 Sed-Chr11:33739172 5.00E-226 dispersed
Sed06g1626 Sed-Chr6:41035090 Sed06g1627 Sed-Chr6:41035090 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1627 K03549 - csv:101212925 987.638