Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1631 ATGATTCGAAAATCAAACTCCGATCGCCGGCCTCCGCCGCTTCCGGCGATAAAACCCTCCGGATGCACATCTCCGGCGACGCTGTTGTCATCGTTGATCAGTCTGAGTCGCAACATTTGCAACTACCGCTCCAAATTCATCGCTAGCAACAAGCAAAACGCCAACAATTCGATTCGCCAAATCAAAATCCTTCAAGCATTCTTCGAAGAGATTCAGTATTCAAAATCCAAAGACCTTCCAGATTCCGTCGCTCTAGTCTTCTCCGATCTCCATTCGATCTTCCTCAAAATCCTGCATCTCTTGGAGGACTGTGCCCTAGAAGGCGCTCGTTTGTTCATGCTCATGAAATCTGACCTAATCGCGAATCGGTTCCGCAATCTGACCAGGTACGTCGTGTCTGCTCTCGATGATTTGCGTTTCGAGTCGATTGATGTCCCGATCGAAGTTGTGGAGCATGTAGAGTTGATGATGAAACAATTGCAAAGAGCGAAGTTCGAAGTCGATCGCGAAGATGAAGAGATTCGCAATGAGGTAGAATCTGTTTTAACTTGTTTCGATTTCGGCATTATTCCTGAAAATACTCGAATTAAACGTGTTCTTGATTACATTGGGATTAGGAAGTGGAGTTCGTGTGATAAGGAAGTGAAATTCTTAGATTCTGAGATTGAAATCCAGTGGTTGAGTCAGGATAAACTAGAGCTTTCCTTTTTGAACAATTTAGTCAGTTTGATGAACTACAGTCGCTGTGCATTGTTTGATGTTGTCGATTACGAAACAACGCATCTCGAAAGCCGAATCGAGATACCTAATTGTTTGAATCCTGATGACTTTCTATGTCCAATCTCGTTGGATTTCATGATTGATCCTGTTATGGTAGGCACAGGACAAACTTATGATCGATCTTCGATTCATAAGTGGCTGATGGCTGGAAATTCCACTTGCCCTAACACAAGGGAGAGATTGATGAACACAGATTTAGTCCCGAATTTCGCTCTCCGTCGGATCATACAACAGTACTGTTCTGAAAATTCAATCCCATTAGAAGAACCAAACACACAAAACTCCAACAGAACCGAAACTCTTGTTGCTGGTTCTTTAATATCCAAGACGATTCTTCGAGAATTGGCAAAATTTCTCGATCGTTTACTCGAATCCGGAACACTTGACGAGAAGAACAAAGCTGCTTATGAGATCAAGCTTCTATCCCAGGCGAGCAGTTTTACACGTTTTTGTTTGGTGGAAATTGGTTTAATTCCAAATTTACTCAAGCTGTTGAGTTCATCAAATGTTTTGACACAAAAGAATGCAATTGAAGCTGTTTCAAACCTCTCAAAGCATTCAAAATGCAAGAGAGTAATAGCCGAAAACAATGGATTAGAAAGAATCGTGAGTGTCATAAGAACAGGCCATAGAATTGAAGCTCGACGAATTGCTGCTATTGCTTTGTTTTTCATGTCATCCATTGAAGATTATAGGAAGCTCATTGGTGAAATCCCAGAAGCAATGTCGGGTTTGGTGAACTTGCTCAAACACGATGAGGATCATAGCAAAAGGAATGCAATGGTTGCAATGTATGGCCTCATAATTCACCGCGAAAACCGCCCGAAAGTTCTCTCGGCCGGAGCAGTTCCATTGTTGGTTGGTTTGGTGGGAAGTTCTGGTAGGGAAAGGCTGATTATGGATGCAATGGAGATTCTTGAATGTCTAGCATATGAGCCTGAAGGAACGGCTGAAATTTTGCGATGCGGAGGTTTGAATTCGGTCACAAAGTATCTTGGTTCGTGTAGCTCGAGAACTGGACAAAAGAACTCTATTTCCTTACTGCGAGCTCTGTATCAATAG 1842 42.56 MIRKSNSDRRPPPLPAIKPSGCTSPATLLSSLISLSRNICNYRSKFIASNKQNANNSIRQIKILQAFFEEIQYSKSKDLPDSVALVFSDLHSIFLKILHLLEDCALEGARLFMLMKSDLIANRFRNLTRYVVSALDDLRFESIDVPIEVVEHVELMMKQLQRAKFEVDREDEEIRNEVESVLTCFDFGIIPENTRIKRVLDYIGIRKWSSCDKEVKFLDSEIEIQWLSQDKLELSFLNNLVSLMNYSRCALFDVVDYETTHLESRIEIPNCLNPDDFLCPISLDFMIDPVMVGTGQTYDRSSIHKWLMAGNSTCPNTRERLMNTDLVPNFALRRIIQQYCSENSIPLEEPNTQNSNRTETLVAGSLISKTILRELAKFLDRLLESGTLDEKNKAAYEIKLLSQASSFTRFCLVEIGLIPNLLKLLSSSNVLTQKNAIEAVSNLSKHSKCKRVIAENNGLERIVSVIRTGHRIEARRIAAIALFFMSSIEDYRKLIGEIPEAMSGLVNLLKHDEDHSKRNAMVAMYGLIIHRENRPKVLSAGAVPLLVGLVGSSGRERLIMDAMEILECLAYEPEGTAEILRCGGLNSVTKYLGSCSSRTGQKNSISLLRALYQ 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41106221 41108358 + Sed0008043.1 Sed06g1631 718174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1631 613 Pfam U-box domain 274 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g1631 613 CDD RING-Ubox_PUB 274 326 IPR045210 -
Sed06g1631 613 SMART Ubox_2 276 339 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g1631 613 Gene3D - 352 613 IPR011989 -
Sed06g1631 613 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 584 IPR000225 GO:0005515(InterPro)
Sed06g1631 613 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 346 IPR013083 -
Sed06g1631 613 PANTHER U BOX DOMAIN-CONTAINING 48 611 - -
Sed06g1631 613 MobiDBLite consensus disorder prediction 1 20 - -
Sed06g1631 613 FunFam RING-type E3 ubiquitin transferase 273 345 - -
Sed06g1631 613 SUPERFAMILY RING/U-box 273 347 - -
Sed06g1631 613 Coils Coil 153 173 - -
Sed06g1631 613 SMART arm_5 446 487 IPR000225 GO:0005515(InterPro)
Sed06g1631 613 SMART arm_5 530 571 IPR000225 GO:0005515(InterPro)
Sed06g1631 613 SMART arm_5 405 445 IPR000225 GO:0005515(InterPro)
Sed06g1631 613 SUPERFAMILY ARM repeat 373 611 IPR016024 -
Sed06g1631 613 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515(InterPro)
Sed06g1631 613 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1631 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1631 Sed-Chr6:41106221 Sed08g2733 Sed-Chr8:39121108 1.70E-70 dispersed
Sed01g1670 Sed-Chr1:12119727 Sed06g1631 Sed-Chr6:41106221 3.00E-145 wgd
Sed04g0636 Sed-Chr4:4911429 Sed06g1631 Sed-Chr6:41106221 2.00E-221 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g734 . . . . . . . Bma15g00190 . . . . . . Sed06g1631 . Cpe01g01524 Bhi07g01714 Tan04g1218 Cmetu10g0188 Lac13g0211 Hepe10g1648 . . Cla05g02532 Cam05g2722 Cec05g2753 Cco05g2794 Clacu05g2724 Cmu05g2578 Cre05g2692 Cone2ag0897 . . . Lsi04g00538 Csa05g02344 Chy10g00911 Cme10g00515 Blo06g00872 . . . . . . . . . . Cma04g01724 . Car04g01755 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002583 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 3 2 1 59