Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1635 ATGGATCTTCTTCGGTCATACACAGATCTAGATGACGAAAATGGAAGCCCTAAACAGGTTACATCTTCACCCGAAGCCTCTCCGCCTCGACTCATTCCTTCCAAAACCTCGGTGCCCAAGGTTGATGATACGATGTTAGCCCTAAAGATGGCGAACGGCCCATCTCATCCCTATGCTAAGGATGGCATTGCACAGGGCATGCGAAACCACAAGCTAGGATTTATTGAGGATGTGGCCATTGAGCCATTTGTCTTTGATGAGCAGTACAACACTTTTCATAAATATGGATATGCTGCTGACCCCTCCGCTTCTGCTGGAAACAATTACATTGAGGATATGGATGCTTTACAGAAGAATGATGCCATTTCCGTGTATAACATTCCACAGCATGAGCAAAAGACGAGGAAGATTGAGAAAAAGAATGAAATGAGTGAGAATGAGGATGTGGGAATGGATTTAAACCCGGCTGAGGTTGATAATCCAGCGACTGATGTTTGGTTGATGAAGAATAGGAAGAGTCCATGGTCTGGAAAGAAGGAAGGTAAGCAAACCGAGCTCACTGAGGAGCAGAAGAAATATGCAGAAGAGTATGCTAAGAAGAAAGGTGAAGAGAAAGGTGGTGAGAAGGGAGAGGTTATGGCGGATAAGAGTACTTTTCATGGGAAAGAGGAGAGGGATTATCAGGGTAGATCTTGGATTACTCCACCGAAGGATGCCAAGGCCACAAATGATCATTGTTATATCCCAAAAAGATTGGTGCATACGTGGAATGAGCATACAAAGGGTGTATCTTCTATTAGGTTCTTCCCTAAACATGGTCATTTGATTCTTTCAGCCGGTATGGATACAAAGGTGAAGGTATGGGAAGTGTTCAATTCTGGGAAATGTATGAGAACCTACATAGGCCACTCACAGGCGGTTCGGGATATTTCGTTTTGTAATGACGGGTCTAAGTTTTTTACTGCCAGTTATGATAAAAATATCAAGTATTGGGATACCGAAACAGGGCAAGTGATATCGACCTTCTCCACCGGGAAAATTTTGTATGTAGTAAAGCTAAATCCCGATAATGATAAGCAAAATATTTTACCGGCAGGGATGAGTGATAAGAAGATCTATGATCAACATTTAGGAGTGGTGAATACCATTACATTTGTAGATGATAATAGAAGGTTTGTCACATCAAGTGATGAAAAGTCAATCCGTGTTTGGGAATTTGGGATTCCTGTTGTTATTAAGTATATTAGTGAGCCTCATATGCATTCCATGCCCTCCATTCCTGTACACCCCAACTCAAATTGGGTTGCTGCACAAAGTTTAGACAATCAAATTTTTATCTATGGCACTAGAGAGAGATTTCAGCTAAATAAGAAAAAGAGGTTTGCTGGGCACATTGTGGCAGGGTATGCTTGCCAAGTCAATTTTTCACCGAATGGACGTTTTTCATGTCGGGTATTTAGAACTCTCAAGTGTCATGAAGGTGTATGCATTGGGTGTGAGTGGCATCCATTAGAGCAAAGTAAAGTAGCAACATGTGGCTGGGATGGACTGATAAAATATTGGGACTAG 1569 42.0 MDLLRSYTDLDDENGSPKQVTSSPEASPPRLIPSKTSVPKVDDTMLALKMANGPSHPYAKDGIAQGMRNHKLGFIEDVAIEPFVFDEQYNTFHKYGYAADPSASAGNNYIEDMDALQKNDAISVYNIPQHEQKTRKIEKKNEMSENEDVGMDLNPAEVDNPATDVWLMKNRKSPWSGKKEGKQTELTEEQKKYAEEYAKKKGEEKGGEKGEVMADKSTFHGKEERDYQGRSWITPPKDAKATNDHCYIPKRLVHTWNEHTKGVSSIRFFPKHGHLILSAGMDTKVKVWEVFNSGKCMRTYIGHSQAVRDISFCNDGSKFFTASYDKNIKYWDTETGQVISTFSTGKILYVVKLNPDNDKQNILPAGMSDKKIYDQHLGVVNTITFVDDNRRFVTSSDEKSIRVWEFGIPVVIKYISEPHMHSMPSIPVHPNSNWVAAQSLDNQIFIYGTRERFQLNKKKRFAGHIVAGYACQVNFSPNGRFSCRVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41121285 41124405 - Sed0003805.1 Sed06g1635 718178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1635 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 405 IPR001680 GO:0005515(InterPro)
Sed06g1635 522 Coils Coil 127 147 - -
Sed06g1635 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 489 522 IPR001680 GO:0005515(InterPro)
Sed06g1635 522 CDD WD40 252 522 - -
Sed06g1635 522 SMART WD40_4 366 405 IPR001680 GO:0005515(InterPro)
Sed06g1635 522 SMART WD40_4 249 289 IPR001680 GO:0005515(InterPro)
Sed06g1635 522 SMART WD40_4 293 332 IPR001680 GO:0005515(InterPro)
Sed06g1635 522 SMART WD40_4 482 522 IPR001680 GO:0005515(InterPro)
Sed06g1635 522 MobiDBLite consensus disorder prediction 1 39 - -
Sed06g1635 522 MobiDBLite consensus disorder prediction 199 231 - -
Sed06g1635 522 SUPERFAMILY WD40 repeat-like 247 522 IPR036322 GO:0005515(InterPro)
Sed06g1635 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 405 - -
Sed06g1635 522 FunFam Pre-mRNA-processing factor 17, putative 236 522 - -
Sed06g1635 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 290 - -
Sed06g1635 522 PANTHER PRE-MRNA-PROCESSING FACTOR 17 46 522 IPR032847 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0003729(PANTHER)|GO:0071013(PANTHER)|GO:0071013(InterPro)
Sed06g1635 522 Gene3D - 235 522 IPR015943 GO:0005515(InterPro)
Sed06g1635 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 290 IPR001680 GO:0005515(InterPro)
Sed06g1635 522 ProSitePatterns Trp-Asp (WD) repeats signature. 276 290 IPR019775 -
Sed06g1635 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 337 - -
Sed06g1635 522 Pfam WD domain, G-beta repeat 251 288 IPR001680 GO:0005515(InterPro)
Sed06g1635 522 Pfam WD domain, G-beta repeat 371 404 IPR001680 GO:0005515(InterPro)
Sed06g1635 522 Pfam WD domain, G-beta repeat 294 332 IPR001680 GO:0005515(InterPro)
Sed06g1635 522 Pfam WD domain, G-beta repeat 486 522 IPR001680 GO:0005515(InterPro)
Sed06g1635 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 489 522 - -
Sed06g1635 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 341 IPR001680 GO:0005515(InterPro)
Sed06g1635 522 MobiDBLite consensus disorder prediction 13 30 - -
Sed06g1635 522 MobiDBLite consensus disorder prediction 199 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1635 K12816 - - csv:101214854 925.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0634 Sed-Chr4:4872124 Sed06g1635 Sed-Chr6:41121285 3.20E-260 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g723 . . . . . Bpe10g00836 Bma14g01790 Bma15g00188 . Cmo18g00805 . . . Car18g00732 Sed06g1635 Cpe09g00502 Cpe01g01528 Bhi07g01722 Tan04g1228 Cmetu10g1166 . Hepe10g1644 . . Cla05g02538 Cam05g2728 Cec05g2758 Cco05g2799 Clacu05g2729 Cmu05g2582 Cre05g2696 . . . Cone12ag0639 Lsi04g00546 Csa05g02340 Chy10g00907 Cme10g00519 Blo06g00874 Blo11g00912 Bda07g01599 . . . . . . . . Cma04g01729 . Car04g01761 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42