Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1639 ATGTCTTCTTCAAACGAAACCTCATTGGATTCAAACGCTACTTCTCCTACTTCAGTGGATTCTGGTTTCGAATCGAGTTTGATATCGACGGAGCCGAACGATTCTTCATTGGATTCAAACAATGATACTTCTACTGCTCCTCCTCCGCCGGAGCCTGATGACTTCCCAATGGTTTTGTCCGAAGGCAATGCTCCTGAACCTTCAACTTCAAATTCTTCATCCCAACAAGTTTCGCCGGCCGACAACGATGTCGGTTCACCCTCGTCTTCATCCACACTCACTTCAGACCTTGTATCGACATCGCCTGCCCCTTCTGCCTCCTCCGATTCGAATTCTTCGGACGAGAATTCAGTGCCCCCGCCTCCGCCTGAAACTTCCAACTCACCACCTCTCCCTCCTCCTCATTCCCATCCTCCTCCTCCGCCGCCGCCTTCACCGCCTCCTCCAATACAGCCGCCTGAGATTGACTCTGCCGAACCTCCATCTTCCCCTCCCCCACCTCCACCTTCTCCAACACCTAAGAAAGATCCCACTAATTCGGCGGATAACAGCGCGCCTCCGGTTCCTGATACATCCGAGGAGGTTCCATCGTCTGAAACGACAGACTCCGCTCCTCCATTACCAAGACCAGACTCGATTCCTTCACCAGGTGCAACTCCGCCGACGAAACGAACTCCTAGTCCACCTCAAGGAATAAGTAATCCAACATCAGAGTCTTCCAATGTTCTTCCACCTCCCCCAACCCCTAGCCCAACCACATCCCCGTCCACGTCCGCTCGTACACCAAACAACTCACCTCCTTCCACCGACTCAACGACAAAGACAACGACAACAACAGTGAGATCACCATCAGGGAAGTCCAATGCACCATCGTCAGGTTCAACTAGTCAAACAAATGTTGTAGTTGGCGCTGCAGTAGCTGGAGTTTTTGTCATTGTTTTGGTTGCCGTGTTTTTTGCTTTCAAAAAGAAGAAGAAAACTCAGGGAGATTTGTACACTGGTCCCTACTTGCCTCCCAATAACTTCGTTGTGAAATCAGATGGAAATTACTATCCGCATCAACAGATGGGCAACTCTGGTTCAGCAGAAGGTTTCTATACTCAGGTCCCGCATACTCCTATTGGAAATAGCTTTGGAAGTCAAAAAGGAACAGGAAACAGTAGCAGTGGAATGGATTCGGGTGTGATAAACTGTGCTAAATCCTTCTTTAGCTATGAGGAGTTGATGGAGATTACGTCCGGATTTTCGCGTCAATACATTCTTGGGGAAGGTGGTTTTGGATGTGTTTACAAGGGTTGGCTTCCAGATGGGAAGCCAGTGGCTGTGAAGCAACTCAAGGCAGGAAGCGGACAAGGGGAGAGGGAATTCAAGGCGGAAGTTGAGATTATAAGCCGCGTTCATCATCGGTATTTGGTGTCTTTAGTCGGCTACTGCGTCTCTGAGAATCATAGATTACTTATCTATGAGTTTGTATCTAATAAAACTCTTGAGTATCATCTCCATGGCGGTAATGGAGTGCCCGTGTTGGAGTGGTGCAAAAGACTCAAAATCGCTCTAGGATCCGCAAAGGGTTTGGCGTATCTTCATGAAGATTGCCATCCCAGAATTATTCACAGGGACATCAAGTCAGCCAACATTTTACTGGATGACGCTTTTGAGGCTAAGGTTGCAGATTTTGGACTTGCGAAACTGACAAACGATACACACACCCACGTTTCGACTCGTGTCATGGGGACATTTGGATACATGGCGCCCGAGTATGCATCAAGTGGGAAATTGACAGACAGATCAGATGTTTTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTCGATCCCACTCAGCCTTTGGGGGATGAGAGTTTGGTCGAATGGGCTCGTCCACTCCTCCTCCGCGCCCTTGAAACTGGAGTGTTCGATGGATTAATAGATCAACGCCTTGAAAAACGTTACGTGGAAAGTGAAGTGTTTAGAATGATCGAAGCAGCAGCTGCCTGTGTTCGTCATTCGGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTGAGAGCACTAGACATTGAAAGTGACATATCCGACCTCAGCAATGGTGTCAAATATGGGCAGAGCACTGCCTATAATTCTGGACAATATAATGAAGACATTTCTAATTTTAGGAGAATGGCACTCGGCGATAGCTCCGAACTCGACATGTACAGTAGTGGTGAATTCAATTCCAGAGAAATGGCTGCAAGCCATGAATCATGGAGATTCCAAAATAACTCAAGTGGCGAATCAGAAACTCGAGCTTTTAATGGACGAAGTGGCGTACCACATGGTCGAAAATTCTAA 2343 48.02 MSSSNETSLDSNATSPTSVDSGFESSLISTEPNDSSLDSNNDTSTAPPPPEPDDFPMVLSEGNAPEPSTSNSSSQQVSPADNDVGSPSSSSTLTSDLVSTSPAPSASSDSNSSDENSVPPPPPETSNSPPLPPPHSHPPPPPPPSPPPPIQPPEIDSAEPPSSPPPPPPSPTPKKDPTNSADNSAPPVPDTSEEVPSSETTDSAPPLPRPDSIPSPGATPPTKRTPSPPQGISNPTSESSNVLPPPPTPSPTTSPSTSARTPNNSPPSTDSTTKTTTTTVRSPSGKSNAPSSGSTSQTNVVVGAAVAGVFVIVLVAVFFAFKKKKKTQGDLYTGPYLPPNNFVVKSDGNYYPHQQMGNSGSAEGFYTQVPHTPIGNSFGSQKGTGNSSSGMDSGVINCAKSFFSYEELMEITSGFSRQYILGEGGFGCVYKGWLPDGKPVAVKQLKAGSGQGEREFKAEVEIISRVHHRYLVSLVGYCVSENHRLLIYEFVSNKTLEYHLHGGNGVPVLEWCKRLKIALGSAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAKVADFGLAKLTNDTHTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLLRALETGVFDGLIDQRLEKRYVESEVFRMIEAAAACVRHSAPKRPRMVQVVRALDIESDISDLSNGVKYGQSTAYNSGQYNEDISNFRRMALGDSSELDMYSSGEFNSREMAASHESWRFQNNSSGESETRAFNGRSGVPHGRKF 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41169743 41172678 + Sed0008082.1 Sed06g1639 718182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1639 780 MobiDBLite consensus disorder prediction 1 44 - -
Sed06g1639 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1639 780 MobiDBLite consensus disorder prediction 63 115 - -
Sed06g1639 780 ProSiteProfiles Protein kinase domain profile. 415 677 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1639 780 MobiDBLite consensus disorder prediction 116 175 - -
Sed06g1639 780 FunFam proline-rich receptor-like protein kinase PERK8 491 704 - -
Sed06g1639 780 SMART serkin_6 415 665 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1639 780 MobiDBLite consensus disorder prediction 755 780 - -
Sed06g1639 780 MobiDBLite consensus disorder prediction 207 228 - -
Sed06g1639 780 MobiDBLite consensus disorder prediction 254 296 - -
Sed06g1639 780 SUPERFAMILY Protein kinase-like (PK-like) 393 689 IPR011009 -
Sed06g1639 780 Gene3D Phosphorylase Kinase; domain 1 381 490 - -
Sed06g1639 780 Pfam Protein kinase domain 418 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1639 780 FunFam Proline-rich receptor-like protein kinase PERK8 387 490 - -
Sed06g1639 780 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 254 725 IPR047117 -
Sed06g1639 780 MobiDBLite consensus disorder prediction 1 296 - -
Sed06g1639 780 Gene3D Transferase(Phosphotransferase) domain 1 491 704 - -
Sed06g1639 780 ProSitePatterns Protein kinases ATP-binding region signature. 421 443 IPR017441 GO:0005524(InterPro)
Sed06g1639 780 CDD STKc_IRAK 421 690 - -
Sed06g1639 780 MobiDBLite consensus disorder prediction 176 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1639 Sed-Chr6:41169743 Sed11g2081 Sed-Chr11:34752321 1.00E-136 dispersed
Sed04g0628 Sed-Chr4:4847736 Sed06g1639 Sed-Chr6:41169743 2.90E-229 wgd
Sed06g0541 Sed-Chr6:4743255 Sed06g1639 Sed-Chr6:41169743 1.20E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79377 PF00069 Pkinase 1.20E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1639 - - - 0.0