Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g1639 | ATGTCTTCTTCAAACGAAACCTCATTGGATTCAAACGCTACTTCTCCTACTTCAGTGGATTCTGGTTTCGAATCGAGTTTGATATCGACGGAGCCGAACGATTCTTCATTGGATTCAAACAATGATACTTCTACTGCTCCTCCTCCGCCGGAGCCTGATGACTTCCCAATGGTTTTGTCCGAAGGCAATGCTCCTGAACCTTCAACTTCAAATTCTTCATCCCAACAAGTTTCGCCGGCCGACAACGATGTCGGTTCACCCTCGTCTTCATCCACACTCACTTCAGACCTTGTATCGACATCGCCTGCCCCTTCTGCCTCCTCCGATTCGAATTCTTCGGACGAGAATTCAGTGCCCCCGCCTCCGCCTGAAACTTCCAACTCACCACCTCTCCCTCCTCCTCATTCCCATCCTCCTCCTCCGCCGCCGCCTTCACCGCCTCCTCCAATACAGCCGCCTGAGATTGACTCTGCCGAACCTCCATCTTCCCCTCCCCCACCTCCACCTTCTCCAACACCTAAGAAAGATCCCACTAATTCGGCGGATAACAGCGCGCCTCCGGTTCCTGATACATCCGAGGAGGTTCCATCGTCTGAAACGACAGACTCCGCTCCTCCATTACCAAGACCAGACTCGATTCCTTCACCAGGTGCAACTCCGCCGACGAAACGAACTCCTAGTCCACCTCAAGGAATAAGTAATCCAACATCAGAGTCTTCCAATGTTCTTCCACCTCCCCCAACCCCTAGCCCAACCACATCCCCGTCCACGTCCGCTCGTACACCAAACAACTCACCTCCTTCCACCGACTCAACGACAAAGACAACGACAACAACAGTGAGATCACCATCAGGGAAGTCCAATGCACCATCGTCAGGTTCAACTAGTCAAACAAATGTTGTAGTTGGCGCTGCAGTAGCTGGAGTTTTTGTCATTGTTTTGGTTGCCGTGTTTTTTGCTTTCAAAAAGAAGAAGAAAACTCAGGGAGATTTGTACACTGGTCCCTACTTGCCTCCCAATAACTTCGTTGTGAAATCAGATGGAAATTACTATCCGCATCAACAGATGGGCAACTCTGGTTCAGCAGAAGGTTTCTATACTCAGGTCCCGCATACTCCTATTGGAAATAGCTTTGGAAGTCAAAAAGGAACAGGAAACAGTAGCAGTGGAATGGATTCGGGTGTGATAAACTGTGCTAAATCCTTCTTTAGCTATGAGGAGTTGATGGAGATTACGTCCGGATTTTCGCGTCAATACATTCTTGGGGAAGGTGGTTTTGGATGTGTTTACAAGGGTTGGCTTCCAGATGGGAAGCCAGTGGCTGTGAAGCAACTCAAGGCAGGAAGCGGACAAGGGGAGAGGGAATTCAAGGCGGAAGTTGAGATTATAAGCCGCGTTCATCATCGGTATTTGGTGTCTTTAGTCGGCTACTGCGTCTCTGAGAATCATAGATTACTTATCTATGAGTTTGTATCTAATAAAACTCTTGAGTATCATCTCCATGGCGGTAATGGAGTGCCCGTGTTGGAGTGGTGCAAAAGACTCAAAATCGCTCTAGGATCCGCAAAGGGTTTGGCGTATCTTCATGAAGATTGCCATCCCAGAATTATTCACAGGGACATCAAGTCAGCCAACATTTTACTGGATGACGCTTTTGAGGCTAAGGTTGCAGATTTTGGACTTGCGAAACTGACAAACGATACACACACCCACGTTTCGACTCGTGTCATGGGGACATTTGGATACATGGCGCCCGAGTATGCATCAAGTGGGAAATTGACAGACAGATCAGATGTTTTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTCGATCCCACTCAGCCTTTGGGGGATGAGAGTTTGGTCGAATGGGCTCGTCCACTCCTCCTCCGCGCCCTTGAAACTGGAGTGTTCGATGGATTAATAGATCAACGCCTTGAAAAACGTTACGTGGAAAGTGAAGTGTTTAGAATGATCGAAGCAGCAGCTGCCTGTGTTCGTCATTCGGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTGAGAGCACTAGACATTGAAAGTGACATATCCGACCTCAGCAATGGTGTCAAATATGGGCAGAGCACTGCCTATAATTCTGGACAATATAATGAAGACATTTCTAATTTTAGGAGAATGGCACTCGGCGATAGCTCCGAACTCGACATGTACAGTAGTGGTGAATTCAATTCCAGAGAAATGGCTGCAAGCCATGAATCATGGAGATTCCAAAATAACTCAAGTGGCGAATCAGAAACTCGAGCTTTTAATGGACGAAGTGGCGTACCACATGGTCGAAAATTCTAA | 2343 | 48.02 | MSSSNETSLDSNATSPTSVDSGFESSLISTEPNDSSLDSNNDTSTAPPPPEPDDFPMVLSEGNAPEPSTSNSSSQQVSPADNDVGSPSSSSTLTSDLVSTSPAPSASSDSNSSDENSVPPPPPETSNSPPLPPPHSHPPPPPPPSPPPPIQPPEIDSAEPPSSPPPPPPSPTPKKDPTNSADNSAPPVPDTSEEVPSSETTDSAPPLPRPDSIPSPGATPPTKRTPSPPQGISNPTSESSNVLPPPPTPSPTTSPSTSARTPNNSPPSTDSTTKTTTTTVRSPSGKSNAPSSGSTSQTNVVVGAAVAGVFVIVLVAVFFAFKKKKKTQGDLYTGPYLPPNNFVVKSDGNYYPHQQMGNSGSAEGFYTQVPHTPIGNSFGSQKGTGNSSSGMDSGVINCAKSFFSYEELMEITSGFSRQYILGEGGFGCVYKGWLPDGKPVAVKQLKAGSGQGEREFKAEVEIISRVHHRYLVSLVGYCVSENHRLLIYEFVSNKTLEYHLHGGNGVPVLEWCKRLKIALGSAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAKVADFGLAKLTNDTHTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLLRALETGVFDGLIDQRLEKRYVESEVFRMIEAAAACVRHSAPKRPRMVQVVRALDIESDISDLSNGVKYGQSTAYNSGQYNEDISNFRRMALGDSSELDMYSSGEFNSREMAASHESWRFQNNSSGESETRAFNGRSGVPHGRKF | 780 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 41169743 | 41172678 | + | Sed0008082.1 | Sed06g1639 | 718182 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g1639 | 780 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Sed06g1639 | 780 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 536 | 548 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed06g1639 | 780 | MobiDBLite | consensus disorder prediction | 63 | 115 | - | - | |
Sed06g1639 | 780 | ProSiteProfiles | Protein kinase domain profile. | 415 | 677 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g1639 | 780 | MobiDBLite | consensus disorder prediction | 116 | 175 | - | - | |
Sed06g1639 | 780 | FunFam | proline-rich receptor-like protein kinase PERK8 | 491 | 704 | - | - | |
Sed06g1639 | 780 | SMART | serkin_6 | 415 | 665 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g1639 | 780 | MobiDBLite | consensus disorder prediction | 755 | 780 | - | - | |
Sed06g1639 | 780 | MobiDBLite | consensus disorder prediction | 207 | 228 | - | - | |
Sed06g1639 | 780 | MobiDBLite | consensus disorder prediction | 254 | 296 | - | - | |
Sed06g1639 | 780 | SUPERFAMILY | Protein kinase-like (PK-like) | 393 | 689 | IPR011009 | - | |
Sed06g1639 | 780 | Gene3D | Phosphorylase Kinase; domain 1 | 381 | 490 | - | - | |
Sed06g1639 | 780 | Pfam | Protein kinase domain | 418 | 617 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g1639 | 780 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 387 | 490 | - | - | |
Sed06g1639 | 780 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 254 | 725 | IPR047117 | - | |
Sed06g1639 | 780 | MobiDBLite | consensus disorder prediction | 1 | 296 | - | - | |
Sed06g1639 | 780 | Gene3D | Transferase(Phosphotransferase) domain 1 | 491 | 704 | - | - | |
Sed06g1639 | 780 | ProSitePatterns | Protein kinases ATP-binding region signature. | 421 | 443 | IPR017441 | GO:0005524(InterPro) | |
Sed06g1639 | 780 | CDD | STKc_IRAK | 421 | 690 | - | - | |
Sed06g1639 | 780 | MobiDBLite | consensus disorder prediction | 176 | 205 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g1639 | Sed-Chr6:41169743 | Sed11g2081 | Sed-Chr11:34752321 | 1.00E-136 | dispersed | |
Sed04g0628 | Sed-Chr4:4847736 | Sed06g1639 | Sed-Chr6:41169743 | 2.90E-229 | wgd | |
Sed06g0541 | Sed-Chr6:4743255 | Sed06g1639 | Sed-Chr6:41169743 | 1.20E-113 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79377 | PF00069 | Pkinase | 1.20E-43 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g1639 | - | - | - | 0.0 |