Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1643 ATGGGGCTTACGTTCACGAAGCTTTTCAGTCGGCTTTTTGCCAAGAAGGAAATGAGAATTCTGATGGTGGGTCTTGATGCGGCTGGTAAGACAACTATCCTGTACAAGCTCAAGCTTGGCGAGATCGTCACAACAATTCCTACCATTGGGTTTAATGTGGAGACTGTAGAATACAAAAACATCAGCTTCACTGTCTGGGATGTTGGGGGTCAAGATAAGATCCGTCCATTGTGGAGGCATTACTTCCAGAACACTCAGGGTCTCATATTTGTTGTTGACAGCAACGATAGAGATCGTGTTGTTGAGGCCAGGGATGAATTGCATAGGATGTTGAACGAGGATGAGCTGAGAGATGCAGTGCTGCTTGTGTTCGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATCACTGATAAGCTCGGCCTCCACTCTCTCCGCCAGCGTCACTGGTACATTCAGAGCACTTGTGCCACCTCTGGAGAGGGACTTTATGAAGGGTTGGATTGGCTCTCCAACAACATTGCTAACAAGGCATAA 546 46.7 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41207502 41211145 - Sed0022848.1 Sed06g1643 718186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1643 181 SMART rab_sub_5 18 180 - -
Sed06g1643 181 SMART arf_sub_2 1 181 - -
Sed06g1643 181 SMART sar_sub_1 1 177 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed06g1643 181 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 178 IPR024156 GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0006886(PANTHER)|GO:0016192(PANTHER)
Sed06g1643 181 NCBIfam small GTP-binding protein domain 16 157 IPR005225 GO:0005525(InterPro)
Sed06g1643 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 179 IPR027417 -
Sed06g1643 181 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed06g1643 181 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Sed06g1643 181 FunFam ADP-ribosylation factor 1 1 181 - -
Sed06g1643 181 Gene3D - 4 181 IPR027417 -
Sed06g1643 181 CDD Arf1_5_like 18 176 IPR045872 GO:0003924(InterPro)
Sed06g1643 181 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed06g1643 181 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed06g1643 181 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed06g1643 181 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1643 K07937 - - sly:101247318 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0126 Sed-Chr3:793537 Sed06g1643 Sed-Chr6:41207502 3.10E-100 dispersed
Sed06g1643 Sed-Chr6:41207502 Sed09g1321 Sed-Chr9:37298611 2.30E-100 dispersed
Sed03g2683 Sed-Chr3:43145219 Sed06g1643 Sed-Chr6:41207502 2.00E-99 wgd
Sed06g0537 Sed-Chr6:4685499 Sed06g1643 Sed-Chr6:41207502 2.40E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g680 . Blo16g01160 . Bda11g01269 Bpe13g01466 . . . . Cmo18g00798 . Cma18g00794 . . Sed06g1643 . . Bhi07g01737 Tan04g1244 Cmetu03g0260 . . . . Cla05g02547 . . Cco05g2808 . . Cre05g2705 . . . . Lsi04g00556 Csa05g02332 Chy10g00900 . . . . Bda11g01269 . . . Bma06g00618 . Cmo04g02828 . Cma04g01736 . . . . . . . . . . . . . . . . . . . . . Chy09g00345 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297