Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1657 ATGGAAGAAATGTACGGCTTGCAATCCACGGCGGAGTATTCCGATAAGGCGCTGATGTCGCCGGAGAATCTGATTCTACCGCCGGATTACCAGAGCCTTCTCGTCACTTCCGGAGAGTTTCACGATCGGATTCCGGTGTTTGGATCCAACGAATTGCTTTCGGCGGCGGCGGCGGCGATCTCCGAAGCGGAAGCGGCGTCCATCACGTCGGAAATTCAGCGCGAAGAAGATTTGGTGAACGTGATCAAAGCGAAGATCTCTTCTCATCCTTCATATCCTCGTTTGCTCGACGCGTATATTGACTGCCAAAAGGTTGGAGCTCCTCCAGAGATCGCACATTTGTTAGAGGGAATCCGTCGCGAAAGCGAACTTTGCAACCGTCACGCACTCGCCACGTGCTTCGGCGTCGATCCTGAGCTTGACGAATTCATGGAAATGTACTGCGATATTTTGGTGAAATACAAATCGGATCTTAAAAGGCCTTTTGACGAAGCAACTACGTTCTTGAATAAGATTGAACTGCAACTTAGCAGCCTCTGCAATGGAGCCTTCTCCAGAACCCTCTCCGATGAAGGAGCTGTCTCGTCGGATGAGGAGTTGAGCGGAGGAGATATCGAAATGGTGGAGGCGGAGGCTCAAACCAATGGCCAAAACAGGGATCTAAAGGACAAGCTTTTGCGTAGATTTGGCAGTCATATTAGTACCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGGAAATTACCAAAAGAAGCCAGGCAAATACTCCTTGAGTGGTGGAATGTACACTGTAAATGGCCCTATCCTACGGAAGGCGATAAGGCTGCACTGGCAGAGAGAACAGGTCTTGACCAGAAACAAATTAACAATTGGTTCATAAATCAGCGAAAACGCCACTGGAAGCCATCTGAGAATATGCAGTTTGAAGGAATGGATGGTCTTTCTTCTGGTAGATTCTTCTCAGAGGACTGA 975 48.1 MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVTSGEFHDRIPVFGSNELLSAAAAAISEAEAASITSEIQREEDLVNVIKAKISSHPSYPRLLDAYIDCQKVGAPPEIAHLLEGIRRESELCNRHALATCFGVDPELDEFMEMYCDILVKYKSDLKRPFDEATTFLNKIELQLSSLCNGAFSRTLSDEGAVSSDEELSGGDIEMVEAEAQTNGQNRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQILLEWWNVHCKWPYPTEGDKAALAERTGLDQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRFFSED 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41329472 41340627 + Sed0017114.1 Sed06g1657 718200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1657 324 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677(InterPro)
Sed06g1657 324 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed06g1657 324 SMART HOX_1 242 307 IPR001356 GO:0003677(InterPro)
Sed06g1657 324 Gene3D - 239 313 - -
Sed06g1657 324 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677(InterPro)
Sed06g1657 324 CDD homeodomain 252 304 IPR001356 GO:0003677(InterPro)
Sed06g1657 324 Pfam ELK domain 220 241 IPR005539 GO:0003677(InterPro)
Sed06g1657 324 SMART KNOX2_2 130 181 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed06g1657 324 SMART ELK_2 220 241 IPR005539 GO:0003677(InterPro)
Sed06g1657 324 SUPERFAMILY Homeodomain-like 241 316 IPR009057 -
Sed06g1657 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 133 312 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed06g1657 324 SMART KNOX1_2 80 124 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed06g1657 324 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed06g1657 324 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed06g1657 324 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1968 Sed-Chr3:13692692 Sed06g1657 Sed-Chr6:41329472 2.10E-72 dispersed
Sed06g1657 Sed-Chr6:41329472 Sed08g0113 Sed-Chr8:674054 2.00E-86 dispersed
Sed04g0619 Sed-Chr4:4788300 Sed06g1657 Sed-Chr6:41329472 4.90E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38903 PF03791 KNOX2 9.80E-24 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1657 - - - 0.0