Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g1657 | ATGGAAGAAATGTACGGCTTGCAATCCACGGCGGAGTATTCCGATAAGGCGCTGATGTCGCCGGAGAATCTGATTCTACCGCCGGATTACCAGAGCCTTCTCGTCACTTCCGGAGAGTTTCACGATCGGATTCCGGTGTTTGGATCCAACGAATTGCTTTCGGCGGCGGCGGCGGCGATCTCCGAAGCGGAAGCGGCGTCCATCACGTCGGAAATTCAGCGCGAAGAAGATTTGGTGAACGTGATCAAAGCGAAGATCTCTTCTCATCCTTCATATCCTCGTTTGCTCGACGCGTATATTGACTGCCAAAAGGTTGGAGCTCCTCCAGAGATCGCACATTTGTTAGAGGGAATCCGTCGCGAAAGCGAACTTTGCAACCGTCACGCACTCGCCACGTGCTTCGGCGTCGATCCTGAGCTTGACGAATTCATGGAAATGTACTGCGATATTTTGGTGAAATACAAATCGGATCTTAAAAGGCCTTTTGACGAAGCAACTACGTTCTTGAATAAGATTGAACTGCAACTTAGCAGCCTCTGCAATGGAGCCTTCTCCAGAACCCTCTCCGATGAAGGAGCTGTCTCGTCGGATGAGGAGTTGAGCGGAGGAGATATCGAAATGGTGGAGGCGGAGGCTCAAACCAATGGCCAAAACAGGGATCTAAAGGACAAGCTTTTGCGTAGATTTGGCAGTCATATTAGTACCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGGAAATTACCAAAAGAAGCCAGGCAAATACTCCTTGAGTGGTGGAATGTACACTGTAAATGGCCCTATCCTACGGAAGGCGATAAGGCTGCACTGGCAGAGAGAACAGGTCTTGACCAGAAACAAATTAACAATTGGTTCATAAATCAGCGAAAACGCCACTGGAAGCCATCTGAGAATATGCAGTTTGAAGGAATGGATGGTCTTTCTTCTGGTAGATTCTTCTCAGAGGACTGA | 975 | 48.1 | MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVTSGEFHDRIPVFGSNELLSAAAAAISEAEAASITSEIQREEDLVNVIKAKISSHPSYPRLLDAYIDCQKVGAPPEIAHLLEGIRRESELCNRHALATCFGVDPELDEFMEMYCDILVKYKSDLKRPFDEATTFLNKIELQLSSLCNGAFSRTLSDEGAVSSDEELSGGDIEMVEAEAQTNGQNRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQILLEWWNVHCKWPYPTEGDKAALAERTGLDQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRFFSED | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 41329472 | 41340627 | + | Sed0017114.1 | Sed06g1657 | 718200 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g1657 | 324 | ProSiteProfiles | ELK domain profile. | 220 | 240 | IPR005539 | GO:0003677(InterPro) | |
Sed06g1657 | 324 | Pfam | KNOX2 domain | 134 | 180 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed06g1657 | 324 | SMART | HOX_1 | 242 | 307 | IPR001356 | GO:0003677(InterPro) | |
Sed06g1657 | 324 | Gene3D | - | 239 | 313 | - | - | |
Sed06g1657 | 324 | ProSiteProfiles | 'Homeobox' domain profile. | 240 | 303 | IPR001356 | GO:0003677(InterPro) | |
Sed06g1657 | 324 | CDD | homeodomain | 252 | 304 | IPR001356 | GO:0003677(InterPro) | |
Sed06g1657 | 324 | Pfam | ELK domain | 220 | 241 | IPR005539 | GO:0003677(InterPro) | |
Sed06g1657 | 324 | SMART | KNOX2_2 | 130 | 181 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed06g1657 | 324 | SMART | ELK_2 | 220 | 241 | IPR005539 | GO:0003677(InterPro) | |
Sed06g1657 | 324 | SUPERFAMILY | Homeodomain-like | 241 | 316 | IPR009057 | - | |
Sed06g1657 | 324 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 133 | 312 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed06g1657 | 324 | SMART | KNOX1_2 | 80 | 124 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed06g1657 | 324 | Pfam | Homeobox KN domain | 260 | 299 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed06g1657 | 324 | ProSitePatterns | 'Homeobox' domain signature. | 278 | 301 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed06g1657 | 324 | Pfam | KNOX1 domain | 82 | 123 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1968 | Sed-Chr3:13692692 | Sed06g1657 | Sed-Chr6:41329472 | 2.10E-72 | dispersed | |
Sed06g1657 | Sed-Chr6:41329472 | Sed08g0113 | Sed-Chr8:674054 | 2.00E-86 | dispersed | |
Sed04g0619 | Sed-Chr4:4788300 | Sed06g1657 | Sed-Chr6:41329472 | 4.90E-151 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38903 | PF03791 | KNOX2 | 9.80E-24 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g1657 | - | - | - | 0.0 |