Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1658 ATGAAACCCTACCATCTCATTTCGATCTCATTTCTTCTGATTCTCTCACTCCGTCTCCCAATCCGATCCGCCGCCGATCCGAGGGCGACGGAGGCGGCGCTGATCTGCTCTAACAACACGGCGTCGCCGCCGGAGCGATCCACATTCGTGACGAACTTCTTGGCGTCCATGGACGCCGTCACGCCGCAAATCGCTGCGCAGCGATTCGCCGACGTCGTGAACGGGACCGGAAACACGACGGTTTACGCCTTCGGGCAGTGTATGGACGATCTGTCGCAATCGGATTGCGATCTGTGCTTTGCGCAGATGAAGACTCAGATCCTGCGGTGCCTTCCGTTCCAGCTCGCCACTCGTGGAGGCAGATTGTTCTACGATGGATGCTATGTCAGGTACGATTCTTACGAGTTTTTCAATGAATCTTTGAGCGTTGTGGATAGATCTGTGTGCGGGAAGTTGGATTACGCTGGGAATAGGACCGTGTTTGGTGATAATGCTATGAAATTGGCGAGGAATTTGAGTGTCGTGGCACCCAGGAATGGTGGATTTGCTGTGGGAACTGTGAATTTTGGGAATGTTTCTGTGTTTGGATTGGCTCAGTGCTGGAGGTTTGTGAGAGGGGATTTGTGTTCTAAGTGTTTGGTTGATGCTGCGAAGAAGATTGGGATTTGTCCTCCTAAAGCTGAAGGGAGGGTGTTGAATGCTGGATGTTACTTTAGGTATTCAACTCAACTGTTTTATTTCAACAGTACGGCGACCGCGACCCCAGGAAATGGGAGGAGCCGCCTGACAATAATATTAGCTTCAATATCTGCTGCTGTGGCTGCTGCATTGATTTTTTCAGCGGCATTTATCTTTGCCAGAAGGAAAGTAGTGAGGAAACGCCAACTGAAAAAGCAACTTGGTCCTCTTAGGGCTATCGTTAACAAGTCCAAGCTTAATTTTTCATACGAAACTCTTGAGAGGGCAACAAATTACTTCAACGAATCCAATAAATTGGGACAAGGAGGTTCTGGTTCAGTTTATAAAGGAACTCTATCGGATGGCCGAGTCGTGGCAGTCAAGAGGCTTTTCTTCAATACAAAACAATGGGTGGATCATTTCTTCAATGAAGTTAATCTTATAAGTGGCATCCGACACAAAAATCTTGTTGGGCTATTGGGATGCAGTATTACAGGTCCCGAAAGCCTCCTTGTTTATGAATACGTGCCGAATCAGAGCTTGCATGATTACTTCGTCGATAACAAGAACGTCCAGCCACTAAGTTGGCAAGCCAGGTTTAAGATTGTCTTAGGCACAGCTGAAGGCTTGGCTTATCTTCACGAGGAAACGAAGGTGAAAATCATTCATCGGGACATTAAGTTGAGCAATATTCTATTGGACAATGATTTCACTCCAAAGATTGCTGATTTTGGACTTGCTAGACTGCTTCCTGAAGATAAGACACACATTAGCACTGCAATTGCTGGCACACTAGGTTACATGGCTCCAGAGTACGTAGTGCGTGGCAAGTTGTCTGAAAAGGCGGACGTTTACAGCTTTGGAGTTTTTGCCATTGAAGTCATCACAGGAAGGAGGAATGGTCACTTCTATCAAGATTCAACATCCATATTACAAATGGTATGGAACTTTTATGGGGAGGGAAGGCTATATGCAGCGGTCGATCCTATCCTTGCGGGTGATTTTCCACGAGATGAAGCATCTATAATGCTTCAAATAGGTCTAGTTTGTGTGCAAGCCTTTGCTGACCTAAGGCCATCCATGTCAATGGTTGTGAAAATGCTCAATGGAAATTATGAGATTCCCCAACCAAAACAGCCTCCATATCTTCATCCTTCAAGTGGAGAAGTAAAACCTCAAAATTCTTCAGACTCGTCCAATCCCATTTCGTACTCGAATCCGCGAGCTTCACAAACTAGCATGACTCAAAGCATCATAGATCCTAGATGA 1947 46.17 MKPYHLISISFLLILSLRLPIRSAADPRATEAALICSNNTASPPERSTFVTNFLASMDAVTPQIAAQRFADVVNGTGNTTVYAFGQCMDDLSQSDCDLCFAQMKTQILRCLPFQLATRGGRLFYDGCYVRYDSYEFFNESLSVVDRSVCGKLDYAGNRTVFGDNAMKLARNLSVVAPRNGGFAVGTVNFGNVSVFGLAQCWRFVRGDLCSKCLVDAAKKIGICPPKAEGRVLNAGCYFRYSTQLFYFNSTATATPGNGRSRLTIILASISAAVAAALIFSAAFIFARRKVVRKRQLKKQLGPLRAIVNKSKLNFSYETLERATNYFNESNKLGQGGSGSVYKGTLSDGRVVAVKRLFFNTKQWVDHFFNEVNLISGIRHKNLVGLLGCSITGPESLLVYEYVPNQSLHDYFVDNKNVQPLSWQARFKIVLGTAEGLAYLHEETKVKIIHRDIKLSNILLDNDFTPKIADFGLARLLPEDKTHISTAIAGTLGYMAPEYVVRGKLSEKADVYSFGVFAIEVITGRRNGHFYQDSTSILQMVWNFYGEGRLYAAVDPILAGDFPRDEASIMLQIGLVCVQAFADLRPSMSMVVKMLNGNYEIPQPKQPPYLHPSSGEVKPQNSSDSSNPISYSNPRASQTSMTQSIIDPR 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41341320 41357854 - Sed0011289.1 Sed06g1658 718201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1658 648 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 167 629 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Sed06g1658 648 FunFam Cysteine-rich receptor-like protein kinase 2 291 401 - -
Sed06g1658 648 CDD STKc_IRAK 332 596 - -
Sed06g1658 648 SMART serkin_6 326 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1658 648 ProSiteProfiles Gnk2-homologous domain profile. 142 245 IPR002902 -
Sed06g1658 648 Pfam Protein kinase domain 327 525 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1658 648 ProSiteProfiles Gnk2-homologous domain profile. 31 136 IPR002902 -
Sed06g1658 648 Pfam Salt stress response/antifungal 36 134 IPR002902 -
Sed06g1658 648 Pfam Salt stress response/antifungal 156 243 IPR002902 -
Sed06g1658 648 FunFam Cysteine-rich receptor-like protein kinase 2 402 602 - -
Sed06g1658 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1658 648 Gene3D Phosphorylase Kinase; domain 1 286 401 - -
Sed06g1658 648 FunFam Cysteine-rich receptor-like protein kinase 3 145 245 - -
Sed06g1658 648 Gene3D Transferase(Phosphotransferase) domain 1 402 604 - -
Sed06g1658 648 FunFam Cysteine-rich receptor-like protein kinase 2 29 136 - -
Sed06g1658 648 SUPERFAMILY Protein kinase-like (PK-like) 312 631 IPR011009 -
Sed06g1658 648 ProSiteProfiles Protein kinase domain profile. 326 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1658 648 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524(InterPro)
Sed06g1658 648 MobiDBLite consensus disorder prediction 602 648 - -
Sed06g1658 648 Gene3D - 144 245 IPR038408 -
Sed06g1658 648 Gene3D - 30 136 IPR038408 -
Sed06g1658 648 MobiDBLite consensus disorder prediction 614 648 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1658 Sed-Chr6:41341320 Sed01g1434 Sed-Chr1:10561428 1.80E-91 dispersed
Sed08g1402 Sed-Chr8:28596307 Sed06g1658 Sed-Chr6:41341320 7.50E-139 transposed
Sed03g2665 Sed-Chr3:42895458 Sed06g1658 Sed-Chr6:41341320 4.00E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79378 PF00069 Pkinase 1.70E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1658 - - - 0.0