Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1667 ATGCCAAATAACAAACACATAGCACAACACTGGGGAGCCTCAAAATCAAATTCAACCTTCTCTGTTTTCTTTCTTCTTCACACCAAAAACAAAGCCATGGCCCTAAACGCCGTCGTTTCACTCTCCATCTTTCTACTAATATTCACTTCTTCTTCATCAGCTATCGCCGCCACCACTAATCAAACAATGGCTCCAATGGAATGTTCAAGCATAAAGAAATGCACGGCCTCGTTATACCACGCAAGCGGTGGCCGGCAAGACACGAGCGAAATCGCCGCTGCGTACTCCGTCGACCCGTCGCAGGTTCAGCCGATCCAGCACGGCGGCGTTCGCGATTACTTAATCACGGCGCCATGTTCGTGCGAGCCGGCCGACGGGGTGTTCGGGACGGCGTATTTTCACGACACGTCGTATCGAGTGAGGGCCGGGGACTCGTTGAGCGACGTGTCGAACCGGAACTACAGCGGACAGGTTTGGATTTCGGGAGATCCGTTGCTTGTTACGGGAAGTGTGTATGGGGTGAAATTGTTGTGTGGGTGTGTGGAAGACGAGTCTAGGATTGTGGTGACCTACACGGTGCAGCCGCATAACACGTTGTCTCAAATCGCGGGTTTGTTTTGGAGTGATGCGAGTGAAATTTATGATTTGAATAGGAAATTGATCGACGATCCTAGCGTGATTTTACCCAATTGGGTTTTGTTTGTGCCCATGCCCAAGATTGCGTTGCAGGATACAAAAGATGCTTCAGGATTTGAATCGGAAAGGGCTGTGATTTTTACCATAGAGGAGATCGAAGAGGCTACGGCTAACTTTGATGAATCTCGCAAGATCGGAGAAGGTGGATATGGAACTGTTTACCATGGAGTACTAAATGAACAGGAGGTTGCAATTAAGAAAATGAAATCTAATAAATCCAAAGAGTTCTTCGCAGAATTAAAAGTCCTTTGCAGGATCCATCATATTAATGTGGTTGAACTTCTAGGATATGCTAGTGGAGACGACCATTTGTATTTGGTTTATGAATATGTTCAAAATGGATCACTTAATGAACATCTTCATGATCCATTGAAAAGAGGGCACCAACCTTTATCATGGACAACAAGAACGCAGATAGCTTTAGATGCAGCAAAGGGTATTGAGTACATTCATGATCATACTAAAGCACGATATGTTCACCGTGACATCAAAACAAGTAACATTCTTCTTGATGAAAGTCTTGGAGCAAAGGTTGCAGATTTTGGACTGGTAAAATTAGTCGGGCGAACGAACGATGACGAACTTGTTGCAACCCGACTAGTCGGGACGCCGGGCTACCTTCCTCCAGAGTCTGTAAAAGAGCTGCAAGTGACCCCCAAAACGGACGTATTTGCATTTGGAGTGGTTTTGGCAGAGCTAATTACAGGAAGAAAAGCACTAATTCGAGATAATCAAGAGCCAAAGAGAACCAAATCATTAATTTCACTGATTTATACAATATTCCAAGGAGAAAACTCCGAGGCTGCTTTGGAAGCTGTTGTGGATGAAAATTTGCATGGAAGCTACCCAATTGACGACATTTACAAGATGGGGGAGATAGCGGCGTGGTGTTTGAACGAAGATCCGGTGGGGAGACCTGAAATGCGTGAAATCGTCGCTTTATTATCACAGCTTATGACATCCGCCGTCGAGTGGGAGGCTTCACTCGGCGGCAACAGCCAAGTTTTCAGCGGCCTCTTTACTGGAAGATGA 1728 45.83 MPNNKHIAQHWGASKSNSTFSVFFLLHTKNKAMALNAVVSLSIFLLIFTSSSSAIAATTNQTMAPMECSSIKKCTASLYHASGGRQDTSEIAAAYSVDPSQVQPIQHGGVRDYLITAPCSCEPADGVFGTAYFHDTSYRVRAGDSLSDVSNRNYSGQVWISGDPLLVTGSVYGVKLLCGCVEDESRIVVTYTVQPHNTLSQIAGLFWSDASEIYDLNRKLIDDPSVILPNWVLFVPMPKIALQDTKDASGFESERAVIFTIEEIEEATANFDESRKIGEGGYGTVYHGVLNEQEVAIKKMKSNKSKEFFAELKVLCRIHHINVVELLGYASGDDHLYLVYEYVQNGSLNEHLHDPLKRGHQPLSWTTRTQIALDAAKGIEYIHDHTKARYVHRDIKTSNILLDESLGAKVADFGLVKLVGRTNDDELVATRLVGTPGYLPPESVKELQVTPKTDVFAFGVVLAELITGRKALIRDNQEPKRTKSLISLIYTIFQGENSEAALEAVVDENLHGSYPIDDIYKMGEIAAWCLNEDPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41434128 41445722 - Sed0021349.1 Sed06g1667 718210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1667 575 SUPERFAMILY LysM domain 189 237 IPR036779 -
Sed06g1667 575 Pfam LysM domain 191 236 IPR018392 -
Sed06g1667 575 SMART serkin_6 271 551 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1667 575 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 49 238 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Sed06g1667 575 Gene3D Phosphorylase Kinase; domain 1 250 342 - -
Sed06g1667 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1667 575 FunFam Kinase family protein 246 342 - -
Sed06g1667 575 ProSiteProfiles Protein kinase domain profile. 271 551 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1667 575 Gene3D Transferase(Phosphotransferase) domain 1 343 561 - -
Sed06g1667 575 CDD LysM 189 235 IPR018392 -
Sed06g1667 575 ProSitePatterns Protein kinases ATP-binding region signature. 277 299 IPR017441 GO:0005524(InterPro)
Sed06g1667 575 FunFam PTI1-like tyrosine-protein kinase 3 343 561 - -
Sed06g1667 575 SUPERFAMILY Protein kinase-like (PK-like) 255 547 IPR011009 -
Sed06g1667 575 ProSiteProfiles LysM domain profile. 189 235 IPR018392 -
Sed06g1667 575 Pfam Protein kinase domain 272 544 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1667 575 Gene3D LysM domain 182 246 IPR036779 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2043 Sed-Chr5:33662228 Sed06g1667 Sed-Chr6:41434128 1.40E-77 dispersed
Sed06g1667 Sed-Chr6:41434128 Sed06g1229 Sed-Chr6:35736122 9.40E-55 dispersed
Sed06g1667 Sed-Chr6:41434128 Sed06g2179 Sed-Chr6:45543130 9.90E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79379 PF00069 Pkinase 2.00E-51 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1667 - - - 0.0