Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed06g1701 | ATGCATAGCCTTGTCCAAACGATGATGCATTATTGCAATTTCATTTGGGTTGCTCTTATCTTCTTGTTCTCTTTTCTATTGATTCTTAAGAACAAAGTTTCAAAACACAAAAACAAAAAGCTTGTTCCTCCTCCAAGCCCTCCAAAGCTTCCTTTTTTGGGTCATTTGCACCTCATTAGCTCCTTTCGTCATCGCTCTTTCTACAACCTTTCAAAAAAATATGGTCCCGTCATGCTCCTTAAGCTTGGCTCCGTCCCAACTGTCATAATCTCTTCTGCCTCTATTGCAAGAGACTTGTTCAAACAACACGATCTTGCATCCTGCAGTCGAGCTCCCTATTCTAGTACTAGAAAATTATCCTACAACTATCTCGACATAGCTTTCTCTCCATATGGCGATCATTGGAGAGAAGTTCGAAGAATTTGTGTGCTTGAGCTCTTCAATGCTAAGCGAGTGCAGTCGTTTCAATCGATAAGAGAAGAACATGTGGATATGTTATTAAAATCCATGTCTCAATTTTCATCTTCTTCAAGTCCAGTTGATTTGAGTGAGAAATTTTATTTTCTCATTGCAAACATAATAACCCGAGTTGCTTTTGGAAAGAGTTTTCGAGGAGGGGAACTAGACAAGGAAAGTTTTCTTCTTCTTGTTCGTAAAGCAGCGATAACATTGGGAAGCTTCTCGGCTACTGACTTCTTTCCAAGGGTGGGTTGGATTATTGATCGACTCAGTGGTGTACATGGAAGGTTGGAGAAGAGTTTTGCTGAATTAGATACTTTCTTCCAACATATAATTGACGATCGAATCAACTTTAGGACAAGTTCGCAGAATGAAGAAAACATTTTAGATGTTTTGTTGAAAATGAAAAGAGAGTGCTCTAAATTTGATGTGCTTCAACTCACTGACGACTGCATCAAAGCACTTGTTATGAATATCTATGTAGCTGGAGTAGAATCAGGAGCGAGTGTCCTTGCATGGGCGATGACAGAGTTGGCTAAAAACCCAAGAGTGATGAAAAAACTACAATATGAGATCAGAAATTGCATAAAAGAAGATCGCGTGAAAGAGAGTGAGCTCGAAAAGCTCGAATATTTAAAAATGGTGGTGAAAGAGGTATTGCGATTACATATACCAGCTCCACTCCTCCCTACAAGAAAAACCATGTCTCATTTCAAGCTTAATGGTTATGACATCGAGCCTAAAGTTCATGTCCATGTCAATGTTTGGGCAATTGCACGAGACCCAAACTACTGGACTAACCCAAAAGAATTTTGGCCAGAGAGATTCATGGGAAGCGATGTGGATTACAAAGGACAAAATTTCGAGTTGTTACCATTTGGAGCTGGTCGAAGAATTTGTCCAGGGATGAACATGGCTATCCTTGCAGTGGAGCTCACACTTGCTAATTTGATGCTTTGTTTTGATTGGAAATTGCCATATGGTATAAAAGAAGAAGATGTGAGTATCGATGAGGATCCTGGTCTATCGCTTAATAAGAAATTGCCTCTCGAACTTATTCCAGTTACATATCCATTAATAGCAAGGAATAACTCAACTAAGAGATAA | 1566 | 39.27 | MHSLVQTMMHYCNFIWVALIFLFSFLLILKNKVSKHKNKKLVPPPSPPKLPFLGHLHLISSFRHRSFYNLSKKYGPVMLLKLGSVPTVIISSASIARDLFKQHDLASCSRAPYSSTRKLSYNYLDIAFSPYGDHWREVRRICVLELFNAKRVQSFQSIREEHVDMLLKSMSQFSSSSSPVDLSEKFYFLIANIITRVAFGKSFRGGELDKESFLLLVRKAAITLGSFSATDFFPRVGWIIDRLSGVHGRLEKSFAELDTFFQHIIDDRINFRTSSQNEENILDVLLKMKRECSKFDVLQLTDDCIKALVMNIYVAGVESGASVLAWAMTELAKNPRVMKKLQYEIRNCIKEDRVKESELEKLEYLKMVVKEVLRLHIPAPLLPTRKTMSHFKLNGYDIEPKVHVHVNVWAIARDPNYWTNPKEFWPERFMGSDVDYKGQNFELLPFGAGRRICPGMNMAILAVELTLANLMLCFDWKLPYGIKEEDVSIDEDPGLSLNKKLPLELIPVTYPLIARNNSTKR | 521 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 41719719 | 41722475 | - | Sed0017567.1 | Sed06g1701 | 718244 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed06g1701 | 521 | PANTHER | CYTOCHROME P450 71B11-RELATED | 21 | 508 | IPR050193 | - | |
| Sed06g1701 | 521 | FunFam | Cytochrome P450 83B1 | 29 | 506 | - | - | |
| Sed06g1701 | 521 | PRINTS | E-class P450 group I signature | 324 | 350 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | PRINTS | E-class P450 group I signature | 407 | 431 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | PRINTS | E-class P450 group I signature | 71 | 90 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | PRINTS | E-class P450 group I signature | 366 | 384 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | PRINTS | E-class P450 group I signature | 453 | 476 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | PRINTS | E-class P450 group I signature | 304 | 321 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | PRINTS | E-class P450 group I signature | 443 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | PRINTS | E-class P450 group I signature | 189 | 207 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | PRINTS | P450 superfamily signature | 367 | 378 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | PRINTS | P450 superfamily signature | 453 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | PRINTS | P450 superfamily signature | 444 | 453 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | PRINTS | P450 superfamily signature | 315 | 332 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | Pfam | Cytochrome P450 | 44 | 499 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | Gene3D | Cytochrome P450 | 28 | 505 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | SUPERFAMILY | Cytochrome P450 | 44 | 507 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1701 | 521 | CDD | CYP71-like | 73 | 503 | - | - | |
| Sed06g1701 | 521 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 446 | 455 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g0573 | Sed-Chr4:4372009 | Sed06g1701 | Sed-Chr6:41719719 | 8.90E-190 | dispersed | |
| Sed05g2404 | Sed-Chr5:36450220 | Sed06g1701 | Sed-Chr6:41719719 | 4.10E-146 | dispersed | |
| Sed06g1699 | Sed-Chr6:41683771 | Sed06g1701 | Sed-Chr6:41719719 | 1.40E-219 | dispersed | |
| Sed06g1701 | Sed-Chr6:41719719 | Sed08g2479 | Sed-Chr8:37711974 | 5.40E-110 | dispersed | |
| Sed06g1700 | Sed-Chr6:41712206 | Sed06g1701 | Sed-Chr6:41719719 | 2.50E-121 | tandem | |
| Sed06g1701 | Sed-Chr6:41719719 | Sed06g1702 | Sed-Chr6:41734492 | 7.60E-62 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed06g1701 | - | - | - | 0.0 |