Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1708 ATGAAGTTCCGATCATGTCTACTCCCCTCCGCCGCCACCGCCGCCGATAAACCATATAATAAATCCCCTTCCTTCTTAATCTCCGACTCCAGCAACTTTTCCGACATGTCGGCCAACTCTTCCTCATCGACACCCAGTTCCGACACCAGCCATTCCAGTCTCCAATCCAATCTCTCCCTTCTATCCCTACCGTCCATTCCATCTCTCCAAAAACTCCCCACCGCCGCCGGCGACGATGTCCCAAACGTCGCCGTTTCCCAACTGCACGTCGCCGATTTCACCCTCCCGGTCTCCCATCTCGCCGTCCACGGCCCCCACCTCTTCATCGCCACCGCCCACAAAATCAACGTCTACGATCGCGCCACGCTCTCCCCCGCCGCCGCATTCACCGCTCCCGATTCCGGCTCCGTCAAGGGAATCGCCTTCCTCCACGGCCAAATCCTCACATCCCACCAAGACGGCAAAATCCGCATCTGGAATCTCAACTTCAAATTAGTCAACACTCTCCCTACAGTCAACGACCGCCTCCGCCGCCTCATCTTCCCCGGAAATTACGTCAGAATCCGTCGCCACAAGAAACTCCTCTGGATCCAACACGCCGACGCCGTGACCGGAATCGCCGTTCGCGGCGATTCCGTCTACTCCGTCTCTTGGGATCGGAGTTTGAAAATCTGGCGCGGCCCCGACCACCGCTGCGTGGAGTCGGTGAAGGCGGCGCACGACGACGCCGTCAACGCGGTGGCCGTCTCCGGCGATGGGACTGTGTACACCGGGTCGGCTGACCGGCGGATCCGGGTATGGGCGAAGCCGGCGGGGGAGAAGCGGCATGTTCTGGTGGCGAGTTTGGAGAAGCACAAATCGGCGGTGAATGCGTTGGCGTTGAACGGCGACGGGTCTCTGCTATTTTCCGGCGCCTGTGACCGGTCGGTGCTTGTTTGGGAAAGGGAGGACAGTGCTTGCCACGTGGCGGTGATCGGCGCGTTGAGGGGTCACGAAAATGCCATTCTGTGTTTGATGTACGTCGGGGATTTGTTGTTGAGTGGGTCCGCGGATCGGACGGTCAGGGTTTGGCGACGTGGCGGTGACGGTGGTTTTAACTGCTTGTCAGTACTGGCCGGTCATCGGAAACCGGTGAAATCGCTGGTGGTTGTTTCCGACGGGGACTCAAACGGCGTCGTTTCGGTGTGTAGTGGGAGTCTTGATGGGGAACTCAAAGCTTGGAAGCTCTCATTTTCAAATTGA 1242 58.78 MKFRSCLLPSAATAADKPYNKSPSFLISDSSNFSDMSANSSSSTPSSDTSHSSLQSNLSLLSLPSIPSLQKLPTAAGDDVPNVAVSQLHVADFTLPVSHLAVHGPHLFIATAHKINVYDRATLSPAAAFTAPDSGSVKGIAFLHGQILTSHQDGKIRIWNLNFKLVNTLPTVNDRLRRLIFPGNYVRIRRHKKLLWIQHADAVTGIAVRGDSVYSVSWDRSLKIWRGPDHRCVESVKAAHDDAVNAVAVSGDGTVYTGSADRRIRVWAKPAGEKRHVLVASLEKHKSAVNALALNGDGSLLFSGACDRSVLVWEREDSACHVAVIGALRGHENAILCLMYVGDLLLSGSADRTVRVWRRGGDGGFNCLSVLAGHRKPVKSLVVVSDGDSNGVVSVCSGSLDGELKAWKLSFSN 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41800481 41801922 - Sed0004425.1 Sed06g1708 718251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1708 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 267 - -
Sed06g1708 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 314 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 Gene3D - 188 274 IPR015943 GO:0005515(InterPro)
Sed06g1708 413 Gene3D - 82 187 IPR015943 GO:0005515(InterPro)
Sed06g1708 413 Gene3D - 275 413 IPR015943 GO:0005515(InterPro)
Sed06g1708 413 PRINTS G protein beta WD-40 repeat signature 395 409 IPR020472 -
Sed06g1708 413 PRINTS G protein beta WD-40 repeat signature 345 359 IPR020472 -
Sed06g1708 413 PRINTS G protein beta WD-40 repeat signature 147 161 IPR020472 -
Sed06g1708 413 SMART WD40_4 364 408 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 SMART WD40_4 321 358 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 SMART WD40_4 122 160 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 SMART WD40_4 275 314 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 SMART WD40_4 229 268 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 SMART WD40_4 190 226 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 Pfam WD domain, G-beta repeat 198 225 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 Pfam WD domain, G-beta repeat 325 357 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 Pfam WD domain, G-beta repeat 366 407 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 Pfam WD domain, G-beta repeat 238 267 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 Pfam WD domain, G-beta repeat 278 313 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 MobiDBLite consensus disorder prediction 28 53 - -
Sed06g1708 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 314 - -
Sed06g1708 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 267 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 SUPERFAMILY WD40 repeat-like 93 409 IPR036322 GO:0005515(InterPro)
Sed06g1708 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 328 357 - -
Sed06g1708 413 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 36 409 IPR045182 -
Sed06g1708 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 357 IPR001680 GO:0005515(InterPro)
Sed06g1708 413 FunFam BnaA09g28200D protein 186 272 - -
Sed06g1708 413 CDD WD40 96 408 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1708 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1686 Sed-Chr1:12233909 Sed06g1708 Sed-Chr6:41800481 7.30E-45 dispersed
Sed06g1708 Sed-Chr6:41800481 Sed08g2540 Sed-Chr8:38078366 1.70E-50 dispersed
Sed04g0553 Sed-Chr4:4128393 Sed06g1708 Sed-Chr6:41800481 9.60E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49