Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1714 ATGGATATGTGCCGAAAGAGAGCCATATTCAAACCTATGACAACAGAACAGCATCAGGCATTGAAGCAAAAATGTGGTGGTTCCTGGAAACTGGTATTGAGGTTTTTACAGGCTGGAGAAGCATGTTGCAGAAGGGAGAAATTCCTGGCAATAGCAGGACCGGGGCACAGCATCGCCGTAACATCGAAAGGAGCTGTTTACTCCTTTGGTTCCAACAACTTAGGACAGCTTGGACATGGTACGACTGAAGAAGAATCACGGCCTCGACTAATCAGATCCCTGCAAGGAATTCGAATAATTCAGGCAGCAGCAGGGCTAGGGAGGACAATGTTAATCAGCGATGCTGGGCATGTTTATGCATTCGGCAAGGACTCGTTTGGTGAAGCTGAGAATGGAGCTCATGTTGTTACTACACCGAAGTTAGTTGAATCCCTAAAGGATATATTTGTGGTGCAAGCTGCAATTGGAAATTTCTTCACTGCTGTACTGTCAAGAGAAGGCAGGGTGTACACATTTTCTTGGGGAAGTGACAATAGGCTTGGTCATCAAACCGAAGCGAACGATTTGGAACCGCGGCCCTTAATGGGAGCATTAGAAAACATTCCAGTTGTTCAAATTGCTGCTGGATATTGCTACCTTCTTGCTCTAGCTTATCATCCTAATGGAATGTCAGTATACTCTGTTGGGTGTGGACTCGGCGGGAAACTCGGTCATGGTTCAAGGACCGATGAGAAACAGCCACGACTCATTGAACAATTTCAGCTTCTGAATCTTCAGCCAATTGCAGTCACTGCTGGTGCATGGCACGCAGCTGTTGTAGGTCGGGACGGTCGAGTTTGTACATGGGGTTGGGGTCGATATGGGTGCCTGGGTCATGGAAATGAGGAGTGTGAATCTACTCCTAAGGTGGTGGAAGCATTAAGCAATGTTAAAGCAGTTCATGTTGTTACAGGAGACTATACAACATTTGTAGTAGCAGATGATGGCGACGTGTATTCGTTCGGTTGTGGGGAATCGGCTAGTTTGGGACAAAACAATGGCGTCGCCGAAGGAGAGGGAAATCGCAACCTGCATGTTTTAAGCCCGGAACTAGTAAGGTCTCTCAAGCAAATTAACGAGCGGGTAGTTCAGATTAGCCTCACTAATTCAATTTATTGGAACGCGCACACCTTTGCTCTGACCGAGTCGGGAAAGTTGTATGCATTTGGTGCCGGTGACAAAGGACAACTCGGGGTCGATCTTCTGGCGAATCAAGCTGAGAGGGTTAATCCAGAGCTAGTTGAAATTGATTTAAATTAA 1299 46.57 MDMCRKRAIFKPMTTEQHQALKQKCGGSWKLVLRFLQAGEACCRREKFLAIAGPGHSIAVTSKGAVYSFGSNNLGQLGHGTTEEESRPRLIRSLQGIRIIQAAAGLGRTMLISDAGHVYAFGKDSFGEAENGAHVVTTPKLVESLKDIFVVQAAIGNFFTAVLSREGRVYTFSWGSDNRLGHQTEANDLEPRPLMGALENIPVVQIAAGYCYLLALAYHPNGMSVYSVGCGLGGKLGHGSRTDEKQPRLIEQFQLLNLQPIAVTAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESTPKVVEALSNVKAVHVVTGDYTTFVVADDGDVYSFGCGESASLGQNNGVAEGEGNRNLHVLSPELVRSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGVDLLANQAERVNPELVEIDLN 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41845516 41849343 - Sed0022551.3 Sed06g1714 718257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1714 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 277 328 IPR000408 -
Sed06g1714 432 SUPERFAMILY RCC1/BLIP-II 358 417 IPR009091 -
Sed06g1714 432 Gene3D - 219 431 IPR009091 -
Sed06g1714 432 Gene3D - 49 218 IPR009091 -
Sed06g1714 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 167 219 IPR000408 -
Sed06g1714 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 116 166 IPR000408 -
Sed06g1714 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 64 115 IPR000408 -
Sed06g1714 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 397 432 IPR000408 -
Sed06g1714 432 Pfam Regulator of chromosome condensation (RCC1) repeat 328 379 IPR000408 -
Sed06g1714 432 Pfam Regulator of chromosome condensation (RCC1) repeat 276 325 IPR000408 -
Sed06g1714 432 Pfam Regulator of chromosome condensation (RCC1) repeat 166 215 IPR000408 -
Sed06g1714 432 Pfam Regulator of chromosome condensation (RCC1) repeat 116 163 IPR000408 -
Sed06g1714 432 Pfam Regulator of chromosome condensation (RCC1) repeat 224 273 IPR000408 -
Sed06g1714 432 Pfam Regulator of chromosome condensation (RCC1) repeat 63 111 IPR000408 -
Sed06g1714 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 223 276 IPR000408 -
Sed06g1714 432 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 263 273 IPR000408 -
Sed06g1714 432 PRINTS Chromosome condensation regulator RCC1 signature 153 169 IPR000408 -
Sed06g1714 432 PRINTS Chromosome condensation regulator RCC1 signature 324 345 IPR000408 -
Sed06g1714 432 PRINTS Chromosome condensation regulator RCC1 signature 266 284 IPR000408 -
Sed06g1714 432 PRINTS Chromosome condensation regulator RCC1 signature 116 132 IPR000408 -
Sed06g1714 432 PRINTS Chromosome condensation regulator RCC1 signature 66 82 IPR000408 -
Sed06g1714 432 PRINTS Chromosome condensation regulator RCC1 signature 169 183 IPR000408 -
Sed06g1714 432 Pfam Regulator of chromosome condensation (RCC1) repeat 388 409 - -
Sed06g1714 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 396 IPR000408 -
Sed06g1714 432 SUPERFAMILY RCC1/BLIP-II 51 346 IPR009091 -
Sed06g1714 432 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 261 417 IPR051709 GO:0005737(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1714 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1712 Sed-Chr6:41845516 Sed06g1714 Sed-Chr6:41845516 3.40E-253 dispersed
Sed06g1714 Sed-Chr6:41845516 Sed14g0709 Sed-Chr14:7173309 2.40E-18 dispersed
Sed06g1713 Sed-Chr6:41845516 Sed06g1714 Sed-Chr6:41845516 3.40E-253 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44