Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1729 ATGGAAGAAGAGATCGGCGAAGAGTTCAAGAGAAGTGACTTCACCTTCGATGATGAAGAAGAAGAAGAGATTCTCAAGAAATGTGTTACGTTCTGTATAAATTACAGTCTAAAGCCTTCGGATATAGTTTCTAGCTGGGAAGTCTACTATCTCAACAGGCAATTAGATGGGTCGATGGTACAAATGGAACAGATGGATGGGTTCTTGCAACATTTACAGAATGAGCAAAAGGAGGCAGCCATTAAAGGAGAACTGGGTCTTCATGTTTATTCGAGCAAAGAAGTGGACATGATTTTGAATGACGAGGATGAAGATCCAACAGAAAACATTCTTAAAACTCCAAATGGGAAATCACAGAGCCTCCGCAAAGATCGATTTGATTTGACACCTTACACAAATGAAGGCTTGTTCTCGTCTGGAAAACCTTCGAAGCATGTGACACCCTTCGGCCAGAGAACAGAAAAATTTGTTGTGAGGTTCAGCATTAATAGCATGCCTGATAATGACACTGCTGAAAAGAAAGATGATTGTGAGAATGATGAGGATGCAATCATCAAGAAAGTTCGACCCCTGCAAAGATGCTCCTTGACAGTCCATGGATCAGGATTTGGACTTGAACCAAATTGCAGGTTCATGTATGACAGAGTTGAAGATAGGTTTAATGCTCTTGAAAACCGAATCATGAAGCATGCTAAAGCTCTTGCTGCATCTAGGCTCTACGAAGAAGTAGTGGACCCTACAGTTGCTTCACAGAAAAACATGTTTGCAGTAGGCATGATTTGTTGTGATGGTGAAGGACACTTGAATGATAAGTCGATCTTGTTGCAAAGCAGTGTTGAGCACTCAGGGGGACAGCGAGTTCGTCTTGAATTACAAAACTTAAGCCAGTTTTCTATCTTTCCAGGCCAGGTAGTAGGCATTGAAGGACATAATCCTAGTGGACACTGCTTGGTTGCATCCAAACTTGTAGATTGTTTTCCTTTGTCTGCCACTATTGATCCCATTCTGCCTCCAGCAAAGAAGATAGCTTTGAACCATGATATTCAGCCAATTGAACAACCTTCTACACAGTCAGAATTATCAATGATTATTGCATCAGGCCCCTATACAACGACAGACAACTTATTGTTTGAGCCTTTGACAGAGTTGCTAGCATATGCAAAAAGAAAGCCTCCTCAGCTACTAATATTGCTTGGGCCATTTGTTGATTCAGAACATTCTGAGATCAAGAAAGGAACTGTAGAGATGAGCTTTGAGGAAATTTTCAACTTTGAAGTTATCAGAAGGGTGCAGGACTATACAGAACACATGGGTCCTGATGCACGGGTACTTTTGATGCCATCTATTAGGGATGCTAATCACGACTATGTTTTTCCTCAGCCTGCTTTTGACATTCCATCTGATCTTAGACTTCAGATATCCAGTCTCTCAAACCCAGGCATTTTGGAAGCAAATCAGGCAAAGATAGCCTGCTGCACCATGGATATTCTCAGACACCTTAGTGGAGAAGAGCTATCAAGAAATCTAACAAAGGGAACAGCCAACGACCGCCTGAGCACACTTGCAAGTCATATCCTCCGGCAGCGCAGCTTTTATCCTCTATACCCTCCAGCCGAAGGAGTCCCACTGGACTTTTCACTTGCCCCAAAAGCCCTCGACATCTCTGTAATACCCGATATTCTCATTCTCCCATCCGATATGAAACACTTCGTGAAGGTTATATCCCTTGGTGAGGGAGGTTCAGACGAAGAGCGATCGAGCTGCGTGTGTGTGAATCCCGGAAGATTGGCCAAGGGTGAAGGAGGCGGTAGTTTTGTAGAGCTTAATTACTTTGGTAGACCTGACCAGATTAACGCTGCAGTTGTCAGCATATGA 1875 43.04 MEEEIGEEFKRSDFTFDDEEEEEILKKCVTFCINYSLKPSDIVSSWEVYYLNRQLDGSMVQMEQMDGFLQHLQNEQKEAAIKGELGLHVYSSKEVDMILNDEDEDPTENILKTPNGKSQSLRKDRFDLTPYTNEGLFSSGKPSKHVTPFGQRTEKFVVRFSINSMPDNDTAEKKDDCENDEDAIIKKVRPLQRCSLTVHGSGFGLEPNCRFMYDRVEDRFNALENRIMKHAKALAASRLYEEVVDPTVASQKNMFAVGMICCDGEGHLNDKSILLQSSVEHSGGQRVRLELQNLSQFSIFPGQVVGIEGHNPSGHCLVASKLVDCFPLSATIDPILPPAKKIALNHDIQPIEQPSTQSELSMIIASGPYTTTDNLLFEPLTELLAYAKRKPPQLLILLGPFVDSEHSEIKKGTVEMSFEEIFNFEVIRRVQDYTEHMGPDARVLLMPSIRDANHDYVFPQPAFDIPSDLRLQISSLSNPGILEANQAKIACCTMDILRHLSGEELSRNLTKGTANDRLSTLASHILRQRSFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGGSDEERSSCVCVNPGRLAKGEGGGSFVELNYFGRPDQINAAVVSI 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41977394 41983807 + Sed0011369.1 Sed06g1729 718272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1729 624 Coils Coil 213 233 - -
Sed06g1729 624 Pfam DNA polymerase alpha/epsilon subunit B 363 572 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Sed06g1729 624 Gene3D - 341 514 - -
Sed06g1729 624 Gene3D - 515 620 - -
Sed06g1729 624 Pfam DNA polymerase alpha subunit B N-terminal 3 54 IPR013627 -
Sed06g1729 624 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 2 610 IPR016722 GO:0005658(PANTHER)|GO:0006270(PANTHER)
Sed06g1729 624 FunFam DNA polymerase alpha subunit B 343 507 - -
Sed06g1729 624 FunFam DNA polymerase alpha subunit B 1 76 - -
Sed06g1729 624 PIRSF DNA_pol_alpha_2 1 616 IPR016722 -
Sed06g1729 624 Pfam DNA polymerase alpha subunit B, OB domain 223 323 IPR054300 -
Sed06g1729 624 Gene3D - 1 79 IPR043034 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1729 K02321 - csv:101206268 1097.8