Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1738 ATGGATGTTCCCGAAGTTGAAGAAATACTCTTTGCTCCCGGTGATGCCAAGTTGCATGGAGAAATGTACAAGAAACTCGCTGCAATTTATTGCCAAGTTATGTCAATTTTTCCTTCCTTGGAAGCAGCACGACCTAGGAGCAAAACTGGTATTCAGGCTTTATGTTCATTGCATGTAGCTCTTGAGAAGGCCAAGAATACTCTTCGGCATTGCTCAGAATCCAGTAAACTCTACTTGGCTATAACTAGTGATGCTGTTCTAGCCAAATTTGGAAAGGCGAGATGTTCTCTTGAAGTTAGTCTTATATGCGTTGAAGATATTGTTTCACAATCAATTGGATTTCAGATTCAGCAGATAGTGAACGAACTCAAGGACACTGTTTTCTTGCTCGACCCACTCGAGAAACAAGTTGGTGATGATATCATTGCACTTCTCTTGCAAGAAAGAAAATTTGATGATTCTAATGGCCATAATGAGCTGGAGCATTTTCATCAGGCCGCCACAAAACTAGGAATTACATCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGAATTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAGTCCATTGTAGCATACCTTTTGCATCTCATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGTCGGATGACACTGACTCACAGGGTGGGTCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGACAGTGGACAAGCCAACAGTCGAGTCTTTGAACAGCAGCTTTCAAAGCTCAGTTCTTTCAATTTCAAGCCAAATTATAGGATATCAGGGCAGATGCCTCTTCCACCTGAGGAATTGAGATGTCCAATATCATTGCAGCTTATGTACGACCCCATTATAATTGATTCCGGGCAAACATATGAAAGGATCTGCATAGAGAAGTGGTTCAGTGATGGTCACAAAACCTGCCCAAAGACTCAATATAGGCTCTCCCATCTGTCCTTGACACCTAATTACTCTGTCAAGGGTCTCGTTGCTAATTGGTGTGAACATAACGGAGTTTCTATCCCTGATGGTCCACCATTGTCACTTGATCTGAATTATTGGAGGCTTGCATTGTCTGATTCGGAGTCTGGAAAATCAAGATCTGTGGACAGTGTTGGCACTTGCGCTTTGAAGGAAGCTAAGGTAGTCCCTTTGGAGGAAAGTGGAACGATTAAGGTTGTTGAAGAAAATGAAGCAGATAATAATGCATTCATGGAGGAATCATCTGAGTTTATCACACTCGAGAGTTGCGTAGATTTTATGTCAGTATTGACTGAAGAGGGAGACTTGAGAAAAAAATGTAAGGTTGTGGAGCAGATAAGACTTTTACTGAAGGATGACGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTTATGGAAGAAAATGCTGATGCTCAGGAAAGTGGAGCCATGGCCCTCTTCAATCTTTCCGTCAATAACAACAGAAACAGGGAAGTGATGATAGCAGCAGGCGTAATCTCGTTGTTGGAGAACATGATTTCAAAATCCAATTTACATGGACCTGCAGCAGCTCTATATTTGAATCTTTCCTGCCTAGAAGATGCCAAACCTATCATTAGTTCGAGTCAAGCCGTTCCTTTCCTGATCCAACTGCTTTCTTGCGACGGTGAATCCCGAACCAAGCTTGATGTGCTCCATACCCTTTATAACCTCTCGACCACTCCCTCCATCGCCCCGGTTCTTCTTTCTTCTGGCATCATAAATGGACTTCAATCCTTTCTCACAACTCCTGGTGACAACATGTGGACAGAGACTTCCTTAGCTGTCTTAATAAACTTAGCTTCCACCCAGTTGGGGATAGAAGAAATCGTTTTGGCCCCAGAGCTTATCAGTGGGTTGGCAGCCATCGTGGATGCTGGCGAACGCGCCGAGCAGGAGCAAGCTGTCTCGTGTCTGTTGATTTGTTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTGTTACAGGAAGGAGTGATTCCTGGATTGGTGGCGATTACGGTAAATGGGACGGCGAGAGGGAAAATAAAAGCTCAGAAGCTTCTGATGTTGTTTAGAGAGCAGAGGCAGAAGGATACCGACATCGGCCAGCACCGAGATGGAAGTAGCAACGCAACCGTGGCTGCTCCAGAATCAAAGCCACTATGCAAATCAGTATCAAAGAAAAAGATGGGGAAAGCATTGAGCTTTTTTGGCAAGAGCAAACGATTTTCACTATACCAATGTTGA 2301 43.72 MDVPEVEEILFAPGDAKLHGEMYKKLAAIYCQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITSDAVLAKFGKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKDTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRIVERARLEEDKRKESIVAYLLHLMRKYSKLFRSELSDDTDSQGGSTPCSPTVRCSLEDSGQANSRVFEQQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPIIIDSGQTYERICIEKWFSDGHKTCPKTQYRLSHLSLTPNYSVKGLVANWCEHNGVSIPDGPPLSLDLNYWRLALSDSESGKSRSVDSVGTCALKEAKVVPLEESGTIKVVEENEADNNAFMEESSEFITLESCVDFMSVLTEEGDLRKKCKVVEQIRLLLKDDDEARILMGANGFAEALMEFLTLALMEENADAQESGAMALFNLSVNNNRNREVMIAAGVISLLENMISKSNLHGPAAALYLNLSCLEDAKPIISSSQAVPFLIQLLSCDGESRTKLDVLHTLYNLSTTPSIAPVLLSSGIINGLQSFLTTPGDNMWTETSLAVLINLASTQLGIEEIVLAPELISGLAAIVDAGERAEQEQAVSCLLICCRGSEKCSQMVLQEGVIPGLVAITVNGTARGKIKAQKLLMLFREQRQKDTDIGQHRDGSSNATVAAPESKPLCKSVSKKKMGKALSFFGKSKRFSLYQC 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42045814 42051496 - Sed0019604.1 Sed06g1738 718281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1738 766 SMART arm_5 544 585 IPR000225 GO:0005515(InterPro)
Sed06g1738 766 SMART arm_5 505 543 IPR000225 GO:0005515(InterPro)
Sed06g1738 766 SMART arm_5 459 503 IPR000225 GO:0005515(InterPro)
Sed06g1738 766 CDD RING-Ubox_PUB 280 332 IPR045210 -
Sed06g1738 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Sed06g1738 766 Gene3D - 403 719 IPR011989 -
Sed06g1738 766 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Sed06g1738 766 SUPERFAMILY RING/U-box 273 355 - -
Sed06g1738 766 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g1738 766 PANTHER U BOX DOMAIN-CONTAINING 23 713 - -
Sed06g1738 766 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g1738 766 Pfam U-box domain 280 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g1738 766 SUPERFAMILY ARM repeat 436 693 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0039 Sed-Chr4:184970 Sed06g1738 Sed-Chr6:42045814 2.00E-270 dispersed
Sed06g1738 Sed-Chr6:42045814 Sed13g0893 Sed-Chr13:6611186 3.00E-64 dispersed
Sed04g0038 Sed-Chr4:184970 Sed06g1738 Sed-Chr6:42045814 2.00E-270 wgd
Sed04g0302 Sed-Chr4:2251408 Sed06g1738 Sed-Chr6:42045814 4.00E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1738 - - - 0.0