Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1740 ATGGAGAAGAATTTGTTATTTCTGGCTCTTAATTTCGTTTCGATTTTTCACTTTCAGGTTTCGTTTAGGGTTTCGGCTCTCTCGCCGGACGGTCTCTCGCTTCTTTCTCTCAAATCGGCGGTCGATCAGTCGCCGGACTCCTCTGTTTTCTCCGATTGGAACGAGGACGACTCCACGCCTTGCCGGTGGTCCGGCATTTCTTGTATGAATGTTTCCGGCGACACGCGTGTCGTTGGAATCGCTCTCTCCGGTAAGAATCTCCATGGCTATATACCTTCTGAGCTCGGTTCGCTTGTTTTTCTCCGGCGATTGAATCTCCACAACAACAATTTCTACGGCTCGATTCCGGAGCAGTTGTTTAATGCTACCTCATTGCATAGCATATTTCTGTACAGCAACAATCTCTCAGGTCCTTTTCCTCCTTCGATCTGCAACATTCCGAGGCTGCAAAACCTCGATCTCTCAAACAACTCACTCGCCGGACCAATCGCCGACGAATTGAAGAATTGTAAGCAACTGCAGCGGTTAATTCTCGCTAGAAATCAATTCGAAGGAGAAATTCCTTCTGGTGTTTGGTCAGGTATGGATAATTTGCTCCAACTCGATCTCTCATCAAACGATTTCAGCGGACCGATTCCGGAGGATTTGGGAGAATTAAAGACACTTTCCGGTACACTTAACCTCTCCTTCAATCATCTCTCCGGTAAAATTCCGACGACGCTTGGAGATTTACCGGTGACGGTGAGTTTCGATCTCCGTAGCAACAATTTGAGCGGTAGCATACCGCAGACAGGTTCATTCGCAAATCAAGGACCAACAGCATTTCTCAATAATCCGAAGTTATGTGGATTTCCTCTGCAGAAATCTTGTGACAGTTCAGAACGCAACTCACCGGAAAATCCAGATTCCAGGCCGTCATACATTGAGGATAAGAAGGGCTTGAGTGCCGGATTGATCATTCTGATCTCGGCCGCGGACGCGGCCGGAGTGGCGTTTATCGGTTTAGTAATAGTATACATATACTGGCGAAGGAAAGACAGTTCCAACGGGTGTAGCTGTACAGCGAAAGGAAAATTCGGAGGGAATAATCAGAAGAATCAACTATGTAATTTTCCTTGTATGAATGGAAGCGATAAGAACAACGAGGAGTCTGAAATGGAGGAACAGGAGATCAGTGACAGAGAAGAAGGAGGGCTTGTGGCCATTGACAAAGGGTTTACGTTCGAGCTCGACGAGCTGCTTCGAGCGTCGGCTTATGTGTTGGGGAAGAGTGGATTGGGGATTGTGTACAAAGTTGTGCTCGGAAATGGGATTCCGGTGGCGGTGCGGCGGCTCGGCGAAGGCGGAGAACAGAGGTATAAGGAGTTTGCGGCGGAGGTGCAGGCCATTGGAAGGGTTAAGCATCCGAATATTGTGAAATTGAGAGCTTATTATTGGGCGCCGGATGAGAAGCTTTTGATTAGTGATTTTATCTCTAATGGGAACTTGGCCTCTGCGCTTCGCGGGAGAAACGGGCAGTCATCATCAGTCCTTTCATGGTCAACAAGGCTACAAATCGCCAAGGGAACCGCAAGAGGGTTAGCCTATCTACACGAATGCAGCCCAAGAAAGTTCGTCCATGGCGACATCAAGCCCTCCAACATCCTCCTCGATAACGACTTCCACCCCAAAATCTCCGACTTCGGCCTCAGCCGCCTAATCAGCATCACCGGAAACAACCCCTCCTCCACCGGCGGCCTCATCGGCGGCGCCTTCTCCTACCTCAAATCCGTCCAAACCGACCGGAACAGCCACAACTACGCCGCCCCGGAATCCCGAGCCACCGCCGCCCGCCCCACCCAGAAATGGGACGTCTATTCCTTCGGCGTCCTCGTCCTCGAACTGCTCACCGGAAAGTCGCCGGAGCTCTCTCCGACCACCTCCACGTCACTGGAGATTCCGGATTTGGTGAGATGGGTCAGGAGAGGATTCGAAGAAGCCAAGCCGTTGTCGGATTTGGTTGACCCTGCTCTGTTACAGGAAGTTCATGCCAAGAAAGAAGTGCTCGCTGTGTTCCACGTGGCGCTTGCGTGTACCGAGACCGACCCGGAGATTCGGCCCAGAATGAAAACCGCGGCCGAGAGTTTCGACCGGATCGGTTCGTGA 2145 50.91 MEKNLLFLALNFVSIFHFQVSFRVSALSPDGLSLLSLKSAVDQSPDSSVFSDWNEDDSTPCRWSGISCMNVSGDTRVVGIALSGKNLHGYIPSELGSLVFLRRLNLHNNNFYGSIPEQLFNATSLHSIFLYSNNLSGPFPPSICNIPRLQNLDLSNNSLAGPIADELKNCKQLQRLILARNQFEGEIPSGVWSGMDNLLQLDLSSNDFSGPIPEDLGELKTLSGTLNLSFNHLSGKIPTTLGDLPVTVSFDLRSNNLSGSIPQTGSFANQGPTAFLNNPKLCGFPLQKSCDSSERNSPENPDSRPSYIEDKKGLSAGLIILISAADAAGVAFIGLVIVYIYWRRKDSSNGCSCTAKGKFGGNNQKNQLCNFPCMNGSDKNNEESEMEEQEISDREEGGLVAIDKGFTFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFAAEVQAIGRVKHPNIVKLRAYYWAPDEKLLISDFISNGNLASALRGRNGQSSSVLSWSTRLQIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFHPKISDFGLSRLISITGNNPSSTGGLIGGAFSYLKSVQTDRNSHNYAAPESRATAARPTQKWDVYSFGVLVLELLTGKSPELSPTTSTSLEIPDLVRWVRRGFEEAKPLSDLVDPALLQEVHAKKEVLAVFHVALACTETDPEIRPRMKTAAESFDRIGS 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42096148 42100628 + Sed0008113.1 Sed06g1740 718283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1740 714 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Sed06g1740 714 ProSiteProfiles Protein kinase domain profile. 415 712 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1740 714 SMART serkin_6 419 712 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1740 714 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 170 711 IPR046959 -
Sed06g1740 714 Gene3D Phosphorylase Kinase; domain 1 406 490 - -
Sed06g1740 714 MobiDBLite consensus disorder prediction 289 308 - -
Sed06g1740 714 MobiDBLite consensus disorder prediction 289 303 - -
Sed06g1740 714 FunFam Leucine-rich repeat receptor-like protein kinase 398 490 - -
Sed06g1740 714 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 193 - -
Sed06g1740 714 Pfam Leucine Rich Repeat 148 170 IPR001611 GO:0005515(InterPro)
Sed06g1740 714 Pfam Leucine Rich Repeat 124 145 IPR001611 GO:0005515(InterPro)
Sed06g1740 714 Pfam Leucine Rich Repeat 101 121 IPR001611 GO:0005515(InterPro)
Sed06g1740 714 Pfam Leucine Rich Repeat 225 244 IPR001611 GO:0005515(InterPro)
Sed06g1740 714 Pfam Leucine Rich Repeat 197 219 IPR001611 GO:0005515(InterPro)
Sed06g1740 714 FunFam Leucine-rich repeat receptor-like protein kinase 197 292 - -
Sed06g1740 714 Gene3D Ribonuclease Inhibitor 192 292 IPR032675 -
Sed06g1740 714 CDD STKc_IRAK 421 712 - -
Sed06g1740 714 Gene3D Transferase(Phosphotransferase) domain 1 491 714 - -
Sed06g1740 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1740 714 FunFam Os07g0541700 protein 498 580 - -
Sed06g1740 714 Pfam Protein kinase domain 420 636 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1740 714 SUPERFAMILY Protein kinase-like (PK-like) 420 706 IPR011009 -
Sed06g1740 714 Gene3D Ribonuclease Inhibitor 29 191 IPR032675 -
Sed06g1740 714 SUPERFAMILY L domain-like 32 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1740 Sed-Chr6:42096148 Sed06g1950 Sed-Chr6:43694452 3.10E-108 dispersed
Sed06g1740 Sed-Chr6:42096148 Sed11g1647 Sed-Chr11:31758718 7.00E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79382 PF00069 Pkinase 8.10E-35 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1740 - - - 0.0