Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed06g1745 | ATGATGGCCGGCGATTCTCCCGAGAAGAACATCCTCCAGAGCACCGCTCTTCTCCAGTACATACTGGAAGCCAACGCCTATCCGAGAGAGCATGAACAGTTGAAGGAACTCAGAGAAACCACGTTCGAGAAGTTCGACAAGTCCCGGAGCGTGATAAGTGTACCGGCGGATCAAGGATTGTTTCTAGCGATGCTTGTGAAATTGATGAACGCTAAGAAAACGATTGAGATCGGTGTATTTACTGGCTATTCGCTTCTCACTACTGCGCTTGCTCTGCCTGCTGATGGCCAGATAACAGCCATAGATGTGGACAGAGAATCATTCGAGATTGGTTTGCCATTTATAAAAAAGGCTGGAGTTGATCAAAAGATCAATTTTGTGGAATCACAGGCACTGGTTGTCCTTGATAACCTCCTCAATGATGACAAAGAAGGGGAGTATGATTTTGCATTCGTAGATGCGAACAAGACAGAGTACATAAAATATCACGAATTTCTGGTAAGATTGGTGAAAATAGGCGGAGTAATTGCATACGACAACACTCTGTGGTACGGATCGGTGGCTCTACAAGACGACGCCGTTCACGAAGATCTGAAGGTGAATAAAGGTCATATTCAAGAACTCAATGCTTTTCTTGTTAATGATTCGCGGGTCGAAATAGCTCTCCTTTCTATTGGGGATGGCCTCACTCTTTGCAGGCGTATTAAATAA | 711 | 44.73 | MMAGDSPEKNILQSTALLQYILEANAYPREHEQLKELRETTFEKFDKSRSVISVPADQGLFLAMLVKLMNAKKTIEIGVFTGYSLLTTALALPADGQITAIDVDRESFEIGLPFIKKAGVDQKINFVESQALVVLDNLLNDDKEGEYDFAFVDANKTEYIKYHEFLVRLVKIGGVIAYDNTLWYGSVALQDDAVHEDLKVNKGHIQELNAFLVNDSRVEIALLSIGDGLTLCRRIK | 236 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 42150399 | 42156621 | + | Sed0000878.1 | Sed06g1745 | 718288 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed06g1745 | 236 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 10 | 235 | IPR002935 | GO:0008171(InterPro) | |
| Sed06g1745 | 236 | Gene3D | Vaccinia Virus protein VP39 | 3 | 236 | IPR029063 | - | |
| Sed06g1745 | 236 | Pfam | O-methyltransferase | 26 | 235 | IPR002935 | GO:0008171(InterPro) | |
| Sed06g1745 | 236 | CDD | AdoMet_MTases | 75 | 178 | - | - | |
| Sed06g1745 | 236 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 17 | 234 | IPR029063 | - | |
| Sed06g1745 | 236 | PANTHER | O-METHYLTRANSFERASE-RELATED | 8 | 235 | IPR050362 | GO:0008757(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed06g0149 | Sed-Chr6:1055213 | Sed06g1745 | Sed-Chr6:42150399 | 2.40E-105 | dispersed | |
| Sed06g0150 | Sed-Chr6:1055316 | Sed06g1745 | Sed-Chr6:42150399 | 1.20E-98 | dispersed | |
| Sed06g1745 | Sed-Chr6:42150399 | Sed10g2029 | Sed-Chr10:36837135 | 7.00E-65 | dispersed | |
| Sed06g0148 | Sed-Chr6:1045626 | Sed06g1745 | Sed-Chr6:42150399 | 1.60E-98 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed06g1745 | K00588 | - | csv:101212121 | 353.214 |