Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1750 ATGAAGCTTCTCATTCTTGCCACCCTCACAATAATCTCACTCTTTTTCTCTTTCACCCTTCTCAACTTCCTCTTTTGCTCTCTCCTCATCTTCTCTCTCAACTTTTGGCTCATCCCGGGCGGCTTCGCCTGGCGGAACCACCACCACCCCTCCTCTAACCTCCCCGGTCCCTCCGGCTGGCCGCTCCTCGGGTTGCTCCCGCAAATGGGGCCGCTCGCTCACCGTAATCTTGCGGCCATTGCTCACTCCTTCAAAGCCACTCGCCTCATGTCCTTCAGCTTGGGTGCCACCCGAGTTGTGATAAGCAGCCACCCCGACACGGCCAAGCAGATTCTCTGCAGTGCGTCTTTCTCCGACCGGCCAGTGAAGCAATCCGCTCAGCTCATGATGTTCGAGCGAGCCATCGGCTTCGCTCCTAATGGGGCATATTGGCGCAATCTTCGACGAATCGCTGCGAACCACATGTTCTCTCCACGGAGAATCTCGGACCTGGAGGGGCTCCGAGGGGAGGTAGCGAGTGAAATGGCGGGGGAGGTGTCGGGGAGTATGGCGGGGGAGGGGACGGTGAGGGTGAGAGAGGTGCTGCAGAAGCATTCGTTGAAGAACATAATAGAGAGCGTGTTTGGGAGTGATTTGGAAATGGAAAAGAAAGAAGAGCTTAGTGGTATGGTGAGAGAAGGGTATGAATTGATAGGGATGTTCAATTGGGAAGATTATTTTCCGGTCAGGTTTTTGGATTTTGGTGGAGTGAAAAGGAAGTGTCATGAACTGGCGGGCAGGGTTCATGTGGTAGTCGGTCAGATTGTTAATGACAAAAAAAGAGTAAAAAATGTGGTGAATAATGACTTTCTTGGTGCTTTGCTAACTTTGCCAAAGGAGGATCAGTTGAGTGATTCAGATATGGTGGCTGTTTTATGGGAAATGATATTTCGTGGAACCGATACCATTGCAATACTCCTAGAATGGATCATGGCCAGGATGATACTGCACCCAGAAATCCAAGCCAAAGCTCAAAATGAGATTGACACGTGCGTAGGGTTCAACCGGCACGTGAGTGATTCCGACATTCCCAACCTTCCTTACCTCCAAGCCATAGTAAAGGAAGTCCTTCGTCTACACCCGCCGGGCCCGTTACTATCGTGGGCCCGTTTGGCAATCCACGATGCCCACGTGGACAAGGTCTTAATCCCAGCTGGCACCACGGCAATGGTCAACATGTGGGCCATAGCCCACGACCCATCCATATGGAAAGACCCGTGGACATTTCGACCCGAACGGTTTATTGAAGACGACATGTCGATCATGGGCACAGACTTGAGACTGGCACCGTTTGGTGCTGGGCGAAGGGTGTGCCCGGGAAGGGCCTTGGGTTTAGCCACTGTGCACCTGTGGCTAGCCGGTTTTCTCCAACGGTTCAAATGGGTTCCGTGTTCGACAAAACCGGTTAATTTGTCGGAGTGTTTGAAGCTATCACTTGAAATGAAGAAACCTTTGGAGTGTCGAGTGGTTAGTCGGTGA 1518 51.98 MKLLILATLTIISLFFSFTLLNFLFCSLLIFSLNFWLIPGGFAWRNHHHPSSNLPGPSGWPLLGLLPQMGPLAHRNLAAIAHSFKATRLMSFSLGATRVVISSHPDTAKQILCSASFSDRPVKQSAQLMMFERAIGFAPNGAYWRNLRRIAANHMFSPRRISDLEGLRGEVASEMAGEVSGSMAGEGTVRVREVLQKHSLKNIIESVFGSDLEMEKKEELSGMVREGYELIGMFNWEDYFPVRFLDFGGVKRKCHELAGRVHVVVGQIVNDKKRVKNVVNNDFLGALLTLPKEDQLSDSDMVAVLWEMIFRGTDTIAILLEWIMARMILHPEIQAKAQNEIDTCVGFNRHVSDSDIPNLPYLQAIVKEVLRLHPPGPLLSWARLAIHDAHVDKVLIPAGTTAMVNMWAIAHDPSIWKDPWTFRPERFIEDDMSIMGTDLRLAPFGAGRRVCPGRALGLATVHLWLAGFLQRFKWVPCSTKPVNLSECLKLSLEMKKPLECRVVSR 505
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 42217602 42220978 + Sed0013114.1 Sed06g1750 718293
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1750 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 444 453 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed06g1750 505 Pfam Cytochrome P450 55 489 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g1750 505 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g1750 505 PRINTS P450 superfamily signature 364 375 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g1750 505 PRINTS P450 superfamily signature 442 451 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g1750 505 PRINTS P450 superfamily signature 451 462 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g1750 505 Gene3D Cytochrome P450 43 503 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g1750 505 FunFam Cytochrome P450 78A5 46 505 - -
Sed06g1750 505 PANTHER CYTOCHROME P450 78A7-RELATED 16 502 IPR051996 -
Sed06g1750 505 SUPERFAMILY Cytochrome P450 55 505 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g1750 505 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g1750 505 PRINTS E-class P450 group I signature 441 451 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g1750 505 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g1750 505 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g1750 505 PRINTS E-class P450 group I signature 451 474 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g1750 505 PRINTS E-class P450 group I signature 363 381 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1750 Sed-Chr6:42217602 Sed08g2131 Sed-Chr8:35279533 2.40E-155 dispersed
Sed06g1750 Sed-Chr6:42217602 Sed01g2286 Sed-Chr1:17299618 1.80E-155 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1750 - - - 0.0