Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed06g1750 | ATGAAGCTTCTCATTCTTGCCACCCTCACAATAATCTCACTCTTTTTCTCTTTCACCCTTCTCAACTTCCTCTTTTGCTCTCTCCTCATCTTCTCTCTCAACTTTTGGCTCATCCCGGGCGGCTTCGCCTGGCGGAACCACCACCACCCCTCCTCTAACCTCCCCGGTCCCTCCGGCTGGCCGCTCCTCGGGTTGCTCCCGCAAATGGGGCCGCTCGCTCACCGTAATCTTGCGGCCATTGCTCACTCCTTCAAAGCCACTCGCCTCATGTCCTTCAGCTTGGGTGCCACCCGAGTTGTGATAAGCAGCCACCCCGACACGGCCAAGCAGATTCTCTGCAGTGCGTCTTTCTCCGACCGGCCAGTGAAGCAATCCGCTCAGCTCATGATGTTCGAGCGAGCCATCGGCTTCGCTCCTAATGGGGCATATTGGCGCAATCTTCGACGAATCGCTGCGAACCACATGTTCTCTCCACGGAGAATCTCGGACCTGGAGGGGCTCCGAGGGGAGGTAGCGAGTGAAATGGCGGGGGAGGTGTCGGGGAGTATGGCGGGGGAGGGGACGGTGAGGGTGAGAGAGGTGCTGCAGAAGCATTCGTTGAAGAACATAATAGAGAGCGTGTTTGGGAGTGATTTGGAAATGGAAAAGAAAGAAGAGCTTAGTGGTATGGTGAGAGAAGGGTATGAATTGATAGGGATGTTCAATTGGGAAGATTATTTTCCGGTCAGGTTTTTGGATTTTGGTGGAGTGAAAAGGAAGTGTCATGAACTGGCGGGCAGGGTTCATGTGGTAGTCGGTCAGATTGTTAATGACAAAAAAAGAGTAAAAAATGTGGTGAATAATGACTTTCTTGGTGCTTTGCTAACTTTGCCAAAGGAGGATCAGTTGAGTGATTCAGATATGGTGGCTGTTTTATGGGAAATGATATTTCGTGGAACCGATACCATTGCAATACTCCTAGAATGGATCATGGCCAGGATGATACTGCACCCAGAAATCCAAGCCAAAGCTCAAAATGAGATTGACACGTGCGTAGGGTTCAACCGGCACGTGAGTGATTCCGACATTCCCAACCTTCCTTACCTCCAAGCCATAGTAAAGGAAGTCCTTCGTCTACACCCGCCGGGCCCGTTACTATCGTGGGCCCGTTTGGCAATCCACGATGCCCACGTGGACAAGGTCTTAATCCCAGCTGGCACCACGGCAATGGTCAACATGTGGGCCATAGCCCACGACCCATCCATATGGAAAGACCCGTGGACATTTCGACCCGAACGGTTTATTGAAGACGACATGTCGATCATGGGCACAGACTTGAGACTGGCACCGTTTGGTGCTGGGCGAAGGGTGTGCCCGGGAAGGGCCTTGGGTTTAGCCACTGTGCACCTGTGGCTAGCCGGTTTTCTCCAACGGTTCAAATGGGTTCCGTGTTCGACAAAACCGGTTAATTTGTCGGAGTGTTTGAAGCTATCACTTGAAATGAAGAAACCTTTGGAGTGTCGAGTGGTTAGTCGGTGA | 1518 | 51.98 | MKLLILATLTIISLFFSFTLLNFLFCSLLIFSLNFWLIPGGFAWRNHHHPSSNLPGPSGWPLLGLLPQMGPLAHRNLAAIAHSFKATRLMSFSLGATRVVISSHPDTAKQILCSASFSDRPVKQSAQLMMFERAIGFAPNGAYWRNLRRIAANHMFSPRRISDLEGLRGEVASEMAGEVSGSMAGEGTVRVREVLQKHSLKNIIESVFGSDLEMEKKEELSGMVREGYELIGMFNWEDYFPVRFLDFGGVKRKCHELAGRVHVVVGQIVNDKKRVKNVVNNDFLGALLTLPKEDQLSDSDMVAVLWEMIFRGTDTIAILLEWIMARMILHPEIQAKAQNEIDTCVGFNRHVSDSDIPNLPYLQAIVKEVLRLHPPGPLLSWARLAIHDAHVDKVLIPAGTTAMVNMWAIAHDPSIWKDPWTFRPERFIEDDMSIMGTDLRLAPFGAGRRVCPGRALGLATVHLWLAGFLQRFKWVPCSTKPVNLSECLKLSLEMKKPLECRVVSR | 505 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 42217602 | 42220978 | + | Sed0013114.1 | Sed06g1750 | 718293 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed06g1750 | 505 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 444 | 453 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed06g1750 | 505 | Pfam | Cytochrome P450 | 55 | 489 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1750 | 505 | PRINTS | P450 superfamily signature | 311 | 328 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1750 | 505 | PRINTS | P450 superfamily signature | 364 | 375 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1750 | 505 | PRINTS | P450 superfamily signature | 442 | 451 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1750 | 505 | PRINTS | P450 superfamily signature | 451 | 462 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1750 | 505 | Gene3D | Cytochrome P450 | 43 | 503 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1750 | 505 | FunFam | Cytochrome P450 78A5 | 46 | 505 | - | - | |
| Sed06g1750 | 505 | PANTHER | CYTOCHROME P450 78A7-RELATED | 16 | 502 | IPR051996 | - | |
| Sed06g1750 | 505 | SUPERFAMILY | Cytochrome P450 | 55 | 505 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1750 | 505 | PRINTS | E-class P450 group I signature | 405 | 429 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1750 | 505 | PRINTS | E-class P450 group I signature | 441 | 451 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1750 | 505 | PRINTS | E-class P450 group I signature | 320 | 346 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1750 | 505 | PRINTS | E-class P450 group I signature | 300 | 317 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1750 | 505 | PRINTS | E-class P450 group I signature | 451 | 474 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1750 | 505 | PRINTS | E-class P450 group I signature | 363 | 381 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed06g1750 | Sed-Chr6:42217602 | Sed08g2131 | Sed-Chr8:35279533 | 2.40E-155 | dispersed | |
| Sed06g1750 | Sed-Chr6:42217602 | Sed01g2286 | Sed-Chr1:17299618 | 1.80E-155 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed06g1750 | - | - | - | 0.0 |