Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1754 ATGGCTTCGGCCTGTGCTTCTTCAGCCATTACGGCTGTGACAATTTCTTCATCTAGTTCACAGAAGAATGGCTGCCCTAGGGCTTCAAATTTTGTAACGGGGAAGAAGTTGAGGTTGAGAAAGTATATAGCTACGGCGGTTGCTCCCTCGTCATCTGCGGTGTGTGCCGCAGCTGACCCCAACCGACCCTTGTGGTTCCCCGGTAGCACCCCTCCTCCGTGGCTCGACGGCAGCCTCCCTGGTGACTTTGGCTTCGACCCTCTTGGTCTTTCTTCTGATCCAGAAAGTCTGAGATGGAACACACAGGCGGAGTTAGTACATTGCCGGTGGGCAATGTTGGGCGCCGCCGGAATATTCATCCCGGAATTCTTAACAAAGATCGGGATCTTAAACACGCCGTCGTGGTACTCTGCCGGCGAATTGGAATACTTCACAGACACCACCACTCTATTCATCGTGGAGCTCATTTTCATCGGTTGGGCCGAGGGTAGACGCTGGGCCGACATCCTCAAACCCGGAAGCGTCAACACCGACCCGATATTCCCCAACAACAAGCTCACGGGCACCGACGTCGGGTACCCGGGAGGGCTCTGGTTCGACCCGCTCGGGTGGGGCACGGGGTCACCAGAAAAGCTCAAGGAATTGAGAACCAAAGAGATTAAAAACGGGCGTTTGGCTATGTTGGCAGTTATGGGCGCGTGGTTTCAACACATTTACACCGGCACCGGTCCGATCGACAATCTTTTTGCACATCTTGCTGATCCTGGCCATGCCACTGTTTTTGCGGCTTTCACACCCAAGTGA 804 54.35 MASACASSAITAVTISSSSSQKNGCPRASNFVTGKKLRLRKYIATAVAPSSSAVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNTQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42277273 42279315 + Sed0007152.1 Sed06g1754 718297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1754 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 262 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Sed06g1754 267 FunFam Chlorophyll a-b binding protein, chloroplastic 72 257 - -
Sed06g1754 267 SUPERFAMILY Chlorophyll a-b binding protein 57 265 - -
Sed06g1754 267 Gene3D Chlorophyll a/b binding protein domain 72 257 - -
Sed06g1754 267 Pfam Chlorophyll A-B binding protein 71 237 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1754 Sed-Chr6:42277273 Sed12g1956 Sed-Chr12:30606377 6.70E-64 dispersed
Sed12g1695 Sed-Chr12:28189246 Sed06g1754 Sed-Chr6:42277273 1.00E-83 transposed
Sed06g0152 Sed-Chr6:1067515 Sed06g1754 Sed-Chr6:42277273 5.70E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1754 K08908 - csv:101214055 492.656