Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1758 ATGGCTAATTGCATTCGAGATGCGGTACAAGACAACGAACACATTTTCCGCAGCCAACTTCCCAGTGTCCAAGTACCTGATGATATCACATTGCCAGAGTTTGTACTCCAGAATGCTGAATCATATGCTGATAATGTGGCATTCGTGGAAGCCGTGAGCGGAAAGGCGTATACTTACCATGATGTCGTGAGAGACACGAGTAGATTCGCTAAGGCCTTGAGTTCTCTGAGGTTGAGGAAGGGGCAGGTGGTTATTGTTGTTCTACCTAATGTTGCAGAATATGCCATTGTTGCTTTAGGGATTATGGCTGCTGGTGGTGTATTTTCTGGTGTGAATCCAGCAGCTCACATATCAGAAATCGAAAAGCAGGTGGAGACCGCAAACGCCAAGCTCGTTGTCACGGACAGCGCAAATTTTGAAAAGGTGAAGGAGTTAAAGCTACCCGTGATCGTGTTGGGTGAGGAACAGATTGAAGGTGCCATGAACTGGCACAAGCTGATCGAAGCCGCGGGCCGTGCAGGCAATAACCTTGAAAAAGAAGATATCAAGCAGACTGATTTATGTGCCCTTCCTTTTTCATCAGGCACCACAGGAGTTTCCAAAGGTGTAATGCTAACTCACAGAAATCTAGTGGCAAACTTGTGTTCTACACTCTCCGGTGTGCCGCAAGAACTCGAGGGGAAGGTTACGACGTTAGGTCTCATACCGTTCTTCCATATTTACGGGATTACCGGAATATGTTGTGCGACGCTTAGAAACAAGGGAAAAGTTGTGGTGATGGGAAGATTTGATCTCAGGACTTTTATCAATGCCCTGATAACACATGAGATCACATTTGCTCCAATTGTTCCTCCTATCATCTTGGCTTTGGTTAAGAATCCTATGGTGGACGAATTCGATCTTAGCGGTCTCAAACTTCAGGCTGTCATGACCGCAGCTGCTCCGCTCGCACCGGAACTTCAATCTGCATTTGAGAAAAAGTTCCCGGGCGTGGATGTTCAAGAGGCGTATGGATTAACTGAGCACAGCTGCATCACTCTCAACTATGGAAGTATAGGCAAAGAGAATCTTCCTGGAAAGAAAAACACGGTTGGCCGCATTCTTCCTAATCTCGAAGTCAAATTCATCGACCCCGACAGCGGCAAGTCTCTGCCAAAGAATACTCCTGGTGAAATCTGTGTAAGAAGCCAGTGTGTGATGCAAGGCTACTACAAAAATGAAGAGGAGACTTCAAGGACTATTGATAACAAAGGCTGGATGCACACGGGTGACATCGGATTCATCGATGACGATGACGATGTGTTCATTGTGGATCGCATTAAAGAGTTGATTAAGTACAAAGGCTTTCAAGTTGCTCCAGCTGAGTTAGAGGCAATCCTTCTTACTCATCCATCCATTGAAGATGCAGCTGTGGTGCCGCTGCCAGATGAAGAAGCCGGTGAGATCCCAGCAGCAAGCGTCGTGTTGGCGTCAAATGCAAAAGAAACTGAAGATGAAATAATCAAATACGTCGCTTCAAACGTTGCAACCTACAAGAAAGTTAGGCTGGTTCATTTTGTGGACATTATCCCGAAATCGCCTTCTGGAAAAGTTATGAGGAGGTTGATTAAAGAGAAGATGATCAAAAAGATTCGAGCCGAGTCGGCCTTTTGA 1653 45.86 MANCIRDAVQDNEHIFRSQLPSVQVPDDITLPEFVLQNAESYADNVAFVEAVSGKAYTYHDVVRDTSRFAKALSSLRLRKGQVVIVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIEKQVETANAKLVVTDSANFEKVKELKLPVIVLGEEQIEGAMNWHKLIEAAGRAGNNLEKEDIKQTDLCALPFSSGTTGVSKGVMLTHRNLVANLCSTLSGVPQELEGKVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFDLRTFINALITHEITFAPIVPPIILALVKNPMVDEFDLSGLKLQAVMTAAAPLAPELQSAFEKKFPGVDVQEAYGLTEHSCITLNYGSIGKENLPGKKNTVGRILPNLEVKFIDPDSGKSLPKNTPGEICVRSQCVMQGYYKNEEETSRTIDNKGWMHTGDIGFIDDDDDVFIVDRIKELIKYKGFQVAPAELEAILLTHPSIEDAAVVPLPDEEAGEIPAASVVLASNAKETEDEIIKYVASNVATYKKVRLVHFVDIIPKSPSGKVMRRLIKEKMIKKIRAESAF 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42324381 42327155 - Sed0021168.1 Sed06g1758 718301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1758 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 441 - -
Sed06g1758 550 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Sed06g1758 550 Gene3D - 442 545 IPR045851 -
Sed06g1758 550 CDD 4CL 25 534 - -
Sed06g1758 550 Pfam AMP-binding enzyme 37 404 IPR000873 -
Sed06g1758 550 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Sed06g1758 550 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Sed06g1758 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 536 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
Sed06g1758 550 Gene3D - 13 441 IPR042099 -
Sed06g1758 550 SUPERFAMILY Acetyl-CoA synthetase-like 18 543 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1758 Sed-Chr6:42324381 Sed07g0709 Sed-Chr7:5280572 4.10E-116 dispersed
Sed04g0287 Sed-Chr4:2140265 Sed06g1758 Sed-Chr6:42324381 1.70E-287 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1758 K01904 - csv:101220731 951.044