Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1769 ATGGAAACTCATTTTCGTTACAATCTATTTGACCGGCGATCCATTATGAAGAACCAGATTCCTGCTGTTAAATGGATCAAAGAATGGGTCCCCCAAGATGTCGTTGCAACTGGAGCAAAGTGCTTTCTTTTCAAATGGGTTACAGAGGATACATTGAAGGCTTTAAATGAGAAGGAAAAACAGTCGGAGGCACCAGAACCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCACTCTCACATTCATGGGGAGAGGCAATATATTTGTCACTATGAGGGCTGTGGAAAGAAATTCTTGGATAGTTCGAAGTTGAAAAGACACTTTCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGCGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCGCATATGAAAACGCATTCACAAGAAAATTATCATATCTGTCCATACCGTGATTGTGGAAAGAGATTTGCCCACGAGTACAAATTGAAGAACCACGTTACATCTCACCATGAAAAGAATGTGACACAAGAAGTGATCAAATATACACCACCTCCTGAGAAGCAAACCAAGGTTTCTAAACCATCTGGAGGAGCTAATGCTTCTGCATCATCAGATCGCCCATATGCTTGTCCCTATGCAGGGTGTGAAAAGGCTTACATCCATGAATACAAGCTTAGGCTTCATTTGAGAAGAGAGCATCCTGGACATCTAATAGAAGACAATGGGAATGTACCACATGAAAATGAGATAGAAGCCAGTGATCAAGATGGATACGGCGGAAAACGGGTAAATATGATAAACCCGAAACAGAACAAGCCTAAACCGAACTTGAAGTTACCGCCTTCGAAAATATCACGGCGAAAAGGAAGAACTCCATCTCCGGCCCCAATGAGTGGAGCTAAAAAGTCGTGGCCGGTTAAAGAAGAAACCTATGAGGAAGAAGATAGTGAAGAAACAGAGGAGGATCGTGAGAATGTGGAGGATGGTTGGAGATATGCTGAAAATGAAGATGATGATGATGAGGAAACAGAGTATGAAGATTGA 1107 42.1 METHFRYNLFDRRSIMKNQIPAVKWIKEWVPQDVVATGAKCFLFKWVTEDTLKALNEKEKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYICHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYRDCGKRFAHEYKLKNHVTSHHEKNVTQEVIKYTPPPEKQTKVSKPSGGANASASSDRPYACPYAGCEKAYIHEYKLRLHLRREHPGHLIEDNGNVPHENEIEASDQDGYGGKRVNMINPKQNKPKPNLKLPPSKISRRKGRTPSPAPMSGAKKSWPVKEETYEEEDSEETEEDRENVEDGWRYAENEDDDDEETEYED 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42416713 42422211 - Sed0022153.1 Sed06g1769 718312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1769 368 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Sed06g1769 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Sed06g1769 368 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Sed06g1769 368 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Sed06g1769 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Sed06g1769 368 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Sed06g1769 368 Gene3D Classic Zinc Finger 162 191 - -
Sed06g1769 368 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
Sed06g1769 368 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Sed06g1769 368 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Sed06g1769 368 MobiDBLite consensus disorder prediction 258 277 - -
Sed06g1769 368 Gene3D Classic Zinc Finger 77 102 - -
Sed06g1769 368 Gene3D Classic Zinc Finger 134 161 - -
Sed06g1769 368 FunFam Zinc finger transcription factor YY1 204 272 - -
Sed06g1769 368 Gene3D Classic Zinc Finger 103 133 - -
Sed06g1769 368 MobiDBLite consensus disorder prediction 188 227 - -
Sed06g1769 368 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Sed06g1769 368 FunFam Putative zinc finger protein 143 103 133 - -
Sed06g1769 368 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 20 264 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
Sed06g1769 368 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Sed06g1769 368 FunFam zinc finger transcription factor YY1 163 194 - -
Sed06g1769 368 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Sed06g1769 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Sed06g1769 368 FunFam zinc finger transcription factor YY1 77 102 - -
Sed06g1769 368 MobiDBLite consensus disorder prediction 209 223 - -
Sed06g1769 368 MobiDBLite consensus disorder prediction 352 368 - -
Sed06g1769 368 FunFam Zinc finger protein 410 134 161 - -
Sed06g1769 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Sed06g1769 368 MobiDBLite consensus disorder prediction 331 345 - -
Sed06g1769 368 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Sed06g1769 368 MobiDBLite consensus disorder prediction 258 368 - -
Sed06g1769 368 Gene3D Classic Zinc Finger 205 271 - -
Sed06g1769 368 SMART c2h2final6 136 160 IPR013087 -
Sed06g1769 368 SMART c2h2final6 229 254 IPR013087 -
Sed06g1769 368 SMART c2h2final6 166 190 IPR013087 -
Sed06g1769 368 SMART c2h2final6 77 101 IPR013087 -
Sed06g1769 368 SMART c2h2final6 106 130 IPR013087 -
Sed06g1769 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0271 Sed-Chr4:2034477 Sed06g1769 Sed-Chr6:42416713 4.50E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38904 PF00096 zf-C2H2 0.00037 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1769 - - - 0.0