Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1770 ATGCTTTATGCTCTGCTTCAAGATTTGAACCGAAGGTGCTTCCCATTTGGAGTGGTTCTGAACTGGATTATTGAAGGGACTTCAGAAACATTGGACATGAGACGCTCCTGGGTGAAAAAAATATCTAAAATCTTTGGCTCCAAACCACCATTCAGCTGGTTAATTTTGTGTTTCATCAGCGTGCTTGCGTTAATTGCAGTACTAGGAACGTCTACTTCTAATGCGGTTGATTCAGTTACTACGGCACCAGTGTCCAATATTTATACTAGTTATAGAAGGCAAAAAGAAAGAGTTGCCATTGATTTGTTTGACTTAAAATCGCTTTCATCGGCCTCTACTCGAATCAAAGAGTTTGGGCTTTGTGGAAAAGAAAGAGAAAACCATGTGCCATGTTATAATGTTACAGCAAACATGTTAGCTGGATACAATGAAGGGAACGAGTATGATAGGCATTGTGAAGTGTCTAGAACAGCAGAGCAGTGCTTGGTTCGCCCTCCTAAAGACTACAAAATCCCTCTGACTTGGCCTGTTGGTAGGGATATAATATGGAGTGGAAATGTGAAGGTAACAAAAGATCAACTTCTGTCTTCTGGAAGCCCTACCAAAAGGTTGATGTTATTAGAAGAGAACCAAATTGCTTTCCACTCAGAGGATGGAGATGGAGTCAATGAGTATTCTTTTCAAATTGCAGAGATGATTGGTTTAGGCAGTGACTCTGAATTTCTTCAAGCTGGTGTACGCTCGATACTTGATATTGGTTGTGGGTTTGGTAGCTTTGGTGCTCGTTTAATGTCGATGAATGTAATGGTTATGTGCATTGCAACCTATGAGGCGACAGGCAGTCAAGTTCAAATGGCTCTTGAGAGAGGCCTTCCAGCGATGCTTGGCAACTTTATTACAAAACAGCTTCCATATCCATCCTTGTCATTTGACATGGTCCACTGTGCACAGTGTGATATCTCTTGGAAAGATAAAGGTGGGATATTTCTTATCGAAGCTGACCGGTTACTTAGACCTGGAGGTTATTTTGTTTTAACCTCTCCCACAGGCAAGACAGTTGGTGGTTCACTGTCTTCCAAGAAGATTGACATTTTGACACCAATGGAAGAGATGACCCGAAGATTATGTTGGACTTTTTTGGCTCAGCAGTATGAAACTTATATTTGGCAGAAAACTTCAAATCCACATTGCTATTTATCTCGCAAGCAGGAAATTGTACCACTTTGTAAAGAAGGGCATGATACTCCATATTATCAACCTCTGGTACCATGCCTGAGTAGTACTATCAGCAAGCGGTGGATTCCAATCCAGAATAGGTCTTCTGGTTTTCATTTGAGCGTTCAATCAGAAGACTACTCCGATGACTTACAAATTTGGCGGTCTGCTTTGAAAAACTATTGGTCCTTACTTACGCCTTTAATTTTCTCTGACCATCCAAAGAGGCCTGGTGATGAAGATCCATTGCCTCCATTTAACATGATACGAAATGTGATGGACATGAATGCTCACTATGGGGGTTTAAATGCTGCGTTTGTGGAGGAGAAGAAAACAGTTTGGATCATGAATGTTGTGCCTGTTGGGTCTCCAAATACGCTTCCGCTCATACTTGACCAAGGTTTTGCTGGTGTTCTGCACGATTGGTGTGAACCTTTCCCCACTTATCCACGAACATATGATTTGCTTCATGCAAATGGGCTCCTCTCACAACTACTTTCAAGTAGGTGCGGCATGATTGAATTACTGGTAGAGATGGATCGTATATTGCGCCCAGAGGGATGGGTTGTCCTAAAGGACAAATTGGGACCAATAGAGAAGGCACGAATGCTTGCTGCACATATTCGTTGGGAGGCCAGGGTGATTGACTTTCAGAATGGCAGTGACCAGAGGCTCCTTGTTTGCCAGAAACCATTCGTGAAAAAATGA 1923 42.28 MLYALLQDLNRRCFPFGVVLNWIIEGTSETLDMRRSWVKKISKIFGSKPPFSWLILCFISVLALIAVLGTSTSNAVDSVTTAPVSNIYTSYRRQKERVAIDLFDLKSLSSASTRIKEFGLCGKERENHVPCYNVTANMLAGYNEGNEYDRHCEVSRTAEQCLVRPPKDYKIPLTWPVGRDIIWSGNVKVTKDQLLSSGSPTKRLMLLEENQIAFHSEDGDGVNEYSFQIAEMIGLGSDSEFLQAGVRSILDIGCGFGSFGARLMSMNVMVMCIATYEATGSQVQMALERGLPAMLGNFITKQLPYPSLSFDMVHCAQCDISWKDKGGIFLIEADRLLRPGGYFVLTSPTGKTVGGSLSSKKIDILTPMEEMTRRLCWTFLAQQYETYIWQKTSNPHCYLSRKQEIVPLCKEGHDTPYYQPLVPCLSSTISKRWIPIQNRSSGFHLSVQSEDYSDDLQIWRSALKNYWSLLTPLIFSDHPKRPGDEDPLPPFNMIRNVMDMNAHYGGLNAAFVEEKKTVWIMNVVPVGSPNTLPLILDQGFAGVLHDWCEPFPTYPRTYDLLHANGLLSQLLSSRCGMIELLVEMDRILRPEGWVVLKDKLGPIEKARMLAAHIRWEARVIDFQNGSDQRLLVCQKPFVKK 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42429129 42434212 + Sed0019559.1 Sed06g1770 718313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1770 640 CDD AdoMet_MTases 249 346 - -
Sed06g1770 640 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 59 637 IPR004159 GO:0005737(PANTHER)|GO:0008168(InterPro)
Sed06g1770 640 FunFam probable pectin methyltransferase QUA2 210 392 - -
Sed06g1770 640 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 127 635 IPR004159 GO:0008168(InterPro)
Sed06g1770 640 Gene3D Vaccinia Virus protein VP39 228 413 IPR029063 -
Sed06g1770 640 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 491 621 IPR029063 -
Sed06g1770 640 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 245 364 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1770 K23870 - - csv:101213009 1189.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1770 Sed-Chr6:42429129 Sed13g2136 Sed-Chr13:25992115 4.80E-185 dispersed
Sed06g1770 Sed-Chr6:42429129 Sed07g1993 Sed-Chr7:34857295 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g66 . . Bda01g02130 . . . Bma14g01641 . . Cmo18g01134 . Cma18g01112 . Car18g01026 Sed06g1770 . . Bhi07g01503 Tan04g1016 Cmetu03g1484 . . . . . . . . . . . . . . . . Csa05g02505 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004930 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41