Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1770 ATGCTTTATGCTCTGCTTCAAGATTTGAACCGAAGGTGCTTCCCATTTGGAGTGGTTCTGAACTGGATTATTGAAGGGACTTCAGAAACATTGGACATGAGACGCTCCTGGGTGAAAAAAATATCTAAAATCTTTGGCTCCAAACCACCATTCAGCTGGTTAATTTTGTGTTTCATCAGCGTGCTTGCGTTAATTGCAGTACTAGGAACGTCTACTTCTAATGCGGTTGATTCAGTTACTACGGCACCAGTGTCCAATATTTATACTAGTTATAGAAGGCAAAAAGAAAGAGTTGCCATTGATTTGTTTGACTTAAAATCGCTTTCATCGGCCTCTACTCGAATCAAAGAGTTTGGGCTTTGTGGAAAAGAAAGAGAAAACCATGTGCCATGTTATAATGTTACAGCAAACATGTTAGCTGGATACAATGAAGGGAACGAGTATGATAGGCATTGTGAAGTGTCTAGAACAGCAGAGCAGTGCTTGGTTCGCCCTCCTAAAGACTACAAAATCCCTCTGACTTGGCCTGTTGGTAGGGATATAATATGGAGTGGAAATGTGAAGGTAACAAAAGATCAACTTCTGTCTTCTGGAAGCCCTACCAAAAGGTTGATGTTATTAGAAGAGAACCAAATTGCTTTCCACTCAGAGGATGGAGATGGAGTCAATGAGTATTCTTTTCAAATTGCAGAGATGATTGGTTTAGGCAGTGACTCTGAATTTCTTCAAGCTGGTGTACGCTCGATACTTGATATTGGTTGTGGGTTTGGTAGCTTTGGTGCTCGTTTAATGTCGATGAATGTAATGGTTATGTGCATTGCAACCTATGAGGCGACAGGCAGTCAAGTTCAAATGGCTCTTGAGAGAGGCCTTCCAGCGATGCTTGGCAACTTTATTACAAAACAGCTTCCATATCCATCCTTGTCATTTGACATGGTCCACTGTGCACAGTGTGATATCTCTTGGAAAGATAAAGGTGGGATATTTCTTATCGAAGCTGACCGGTTACTTAGACCTGGAGGTTATTTTGTTTTAACCTCTCCCACAGGCAAGACAGTTGGTGGTTCACTGTCTTCCAAGAAGATTGACATTTTGACACCAATGGAAGAGATGACCCGAAGATTATGTTGGACTTTTTTGGCTCAGCAGTATGAAACTTATATTTGGCAGAAAACTTCAAATCCACATTGCTATTTATCTCGCAAGCAGGAAATTGTACCACTTTGTAAAGAAGGGCATGATACTCCATATTATCAACCTCTGGTACCATGCCTGAGTAGTACTATCAGCAAGCGGTGGATTCCAATCCAGAATAGGTCTTCTGGTTTTCATTTGAGCGTTCAATCAGAAGACTACTCCGATGACTTACAAATTTGGCGGTCTGCTTTGAAAAACTATTGGTCCTTACTTACGCCTTTAATTTTCTCTGACCATCCAAAGAGGCCTGGTGATGAAGATCCATTGCCTCCATTTAACATGATACGAAATGTGATGGACATGAATGCTCACTATGGGGGTTTAAATGCTGCGTTTGTGGAGGAGAAGAAAACAGTTTGGATCATGAATGTTGTGCCTGTTGGGTCTCCAAATACGCTTCCGCTCATACTTGACCAAGGTTTTGCTGGTGTTCTGCACGATTGGTGTGAACCTTTCCCCACTTATCCACGAACATATGATTTGCTTCATGCAAATGGGCTCCTCTCACAACTACTTTCAAGTAGGTGCGGCATGATTGAATTACTGGTAGAGATGGATCGTATATTGCGCCCAGAGGGATGGGTTGTCCTAAAGGACAAATTGGGACCAATAGAGAAGGCACGAATGCTTGCTGCACATATTCGTTGGGAGGCCAGGGTGATTGACTTTCAGAATGGCAGTGACCAGAGGCTCCTTGTTTGCCAGAAACCATTCGTGAAAAAATGA 1923 42.28 MLYALLQDLNRRCFPFGVVLNWIIEGTSETLDMRRSWVKKISKIFGSKPPFSWLILCFISVLALIAVLGTSTSNAVDSVTTAPVSNIYTSYRRQKERVAIDLFDLKSLSSASTRIKEFGLCGKERENHVPCYNVTANMLAGYNEGNEYDRHCEVSRTAEQCLVRPPKDYKIPLTWPVGRDIIWSGNVKVTKDQLLSSGSPTKRLMLLEENQIAFHSEDGDGVNEYSFQIAEMIGLGSDSEFLQAGVRSILDIGCGFGSFGARLMSMNVMVMCIATYEATGSQVQMALERGLPAMLGNFITKQLPYPSLSFDMVHCAQCDISWKDKGGIFLIEADRLLRPGGYFVLTSPTGKTVGGSLSSKKIDILTPMEEMTRRLCWTFLAQQYETYIWQKTSNPHCYLSRKQEIVPLCKEGHDTPYYQPLVPCLSSTISKRWIPIQNRSSGFHLSVQSEDYSDDLQIWRSALKNYWSLLTPLIFSDHPKRPGDEDPLPPFNMIRNVMDMNAHYGGLNAAFVEEKKTVWIMNVVPVGSPNTLPLILDQGFAGVLHDWCEPFPTYPRTYDLLHANGLLSQLLSSRCGMIELLVEMDRILRPEGWVVLKDKLGPIEKARMLAAHIRWEARVIDFQNGSDQRLLVCQKPFVKK 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42429129 42434212 + Sed0019559.1 Sed06g1770 718313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1770 640 CDD AdoMet_MTases 249 346 - -
Sed06g1770 640 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 59 637 IPR004159 GO:0005737(PANTHER)|GO:0008168(InterPro)
Sed06g1770 640 FunFam probable pectin methyltransferase QUA2 210 392 - -
Sed06g1770 640 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 127 635 IPR004159 GO:0008168(InterPro)
Sed06g1770 640 Gene3D Vaccinia Virus protein VP39 228 413 IPR029063 -
Sed06g1770 640 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 491 621 IPR029063 -
Sed06g1770 640 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 245 364 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1770 Sed-Chr6:42429129 Sed13g2136 Sed-Chr13:25992115 4.80E-185 dispersed
Sed06g1770 Sed-Chr6:42429129 Sed07g1993 Sed-Chr7:34857295 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1770 K23870 - csv:101213009 1189.48