Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1772 ATGGCAGCTTTCGTTTTGTTAGCGTTTTTCCTATCCCTAACTGGTCAATCTTATGCAAACTATTGCGTATGTAAAGATGGAGTGAGCCAACAAGTTCTTCAAAAGGCACTGGATTACGCCTGTGGGGCTGGAGCCGACTGTTCCAAGATCCTCCCCAGTGGCGCCTGTTTTCAGCCCAACACCGTCAAAGATCACTGCAGTTACGCCGTCAACAGTTACTTCCAGAGAAAGGGACAAACCCAAGGAAGCTGCGACTTCGCCGGCGCCGCCACTCCCTCCGTTACCCTCACCGCCTCTATGCCCTCTGGTTGCGTTTATCCTTCTAGCCCTAGCAATGCGGGAACCTCGCCGACGAACTCCGGCGGAACGATGACTCCGGGGACGACGAATCCGGGGATGTCGCCGACGGTGTTCGGGAACGGGATCAGCCCGAGCGGCGGTGGGTTCGACGGCAGCGGCGGCGCGGGTTTCGATGAGAATAGGAACTTGCTTTCGGCGGTGGCCCTAACACTTTGGCTTTCTCTAATGTTGCTCTGGGGATGA 543 56.17 MAAFVLLAFFLSLTGQSYANYCVCKDGVSQQVLQKALDYACGAGADCSKILPSGACFQPNTVKDHCSYAVNSYFQRKGQTQGSCDFAGAATPSVTLTASMPSGCVYPSSPSNAGTSPTNSGGTMTPGTTNPGMSPTVFGNGISPSGGGFDGSGGAGFDENRNLLSAVALTLWLSLMLLWG 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42444665 42446381 + Sed0007510.1 Sed06g1772 718315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1772 180 SMART X8_cls 20 106 IPR012946 -
Sed06g1772 180 Pfam X8 domain 21 91 IPR012946 -
Sed06g1772 180 PANTHER BETA-1,3 GLUCANASE 11 109 IPR044788 -
Sed06g1772 180 Gene3D - 16 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0094 Sed-Chr4:559460 Sed06g1772 Sed-Chr6:42444665 9.10E-37 dispersed
Sed06g1772 Sed-Chr6:42444665 Sed12g1997 Sed-Chr12:30896513 5.10E-31 dispersed
Sed06g1772 Sed-Chr6:42444665 Sed07g2048 Sed-Chr7:35605668 1.10E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1772 - - - 0.0