Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1777 ATGTGGAAAAGAGCTCTGTATTCGATTCATCACAGATCGTTTTCATCTTCACCAGAAATCCCATCTCTGTATTCATTTCTCCAACCCTCCCTTTTTGCCCTAAACAAAACCCCATTTTCGCGATCTCAACAACAACCCACGAATCTCCCTCACAATCAAACCCCACAAATCCTAACCCCAGATCGCATCGCCGCCGCGGAAACCGCCCTCCACAAGTCCCTCCTCACCGGCGACACCGACGAAGCGTGGAAGTCCTTCAAACTCCTCACCGGAAGCTCCGTTTTCCCATGTAAGTCCCTCACGAATTCGCTTATTGCACATTTGTCCTCGGTCGGGGACGTTCATAATCTCAAACGGGCGTTTGCGTCTGTTGTGTTTGTTGTTGAGAGGAAACCTGAGTTTTTGGATTGTGGTTCTGTTAAAGCGCTTTTGGGTTCTATGAAATGTGCCAATACGGCTACTCCTGCGATTTCTTTGGTTAAATGTTTGTTTAAGAATCGATGTTTTGTGCCTTTTAGTGTTTGGGGTTGTGAACTTGTTGATATTTGTAGGCAGAGTGGTAGTTTGATTCCGTTTTTGAGAGTGTTTGAAGAGATTTGTAGGGTTGTTTTGGATGAGAGGTTGGATTTTATGAAACCGGATGTTAATGCGTGTAATGCTGCACTTGAGGGGTGTTGTTATGAGCTTGAATCTGTGACGGATGCCGAGGAAGTTGTCGAAATGATGTCGGTTTTGAATCTTCGGCCTGATGGAGTGAGCTTTGGTGCTCTTGCTTATTTGTATGCATTGAAGGGGTTTGAAGAGAAGATTGTTGAGTTAGAAGGTTTGATGGGAAACTTTGAATTTGCATGTAAAAGTCTCTTCTTTGGTAGTTTGGTAAGTGGATATGTTAATTCACGCAACTTTTCTGCGGTTTCGAAGACTATGTTGCGCAGTTTGAAAGATGAAGGTGGGGAACGTGTAACTTTTGATGAAAAAACATATTTGAAAGTAGTTCAGGGATTTGTTCAAAGTGGAAATCTTAAGGAATTGTGTACATTGATTGTTGATTCTAAGAATTTCGAATCTTCATCGGAAGCCGATGGAGGTATTGGATTCGGTATCATTAATGCCTGTGTTAGTATTGGATGGTTAGATAAGGCGCACAACATTCTGAGTGAGATCAATTCCCAGGGAGTTTCTCTAGGCCTTGGAGTCTATCTGCCAATCTTGAAAGCTTACCGTAAAGAGCGTCGAACAGCTGAAGCAAGCCAATTAATCATGGATATTAGCAGTTCCGGGATTCAATTGGATGTAGAGAGTTACGATGCTCTCATAGAAGCATCAATGTCGAGTCAAGATTTTCAGTCTGCTTTTTCTTTGTTCAGGAGTATGAGAGAAACAAGAAAATCTGACACGAAGGCTAGTTATCTAACTATTATGACTGGCTTAATGGAGAATCATAGGCCTGAGTTGATGGCTGCTTTCTTAGACGAAGTTGTCGAGGATCCTCTTGTTGAAGTTGGAACTCATGATTGGAATTCTATTATACATGCCTTTTGCAAAGCTGGAAGGCTCGAGGATGCGAGGAGAACATTCCGAAGAATGAAATTTCTGCAGTTTGAACCAAACGAGCAAACCTTCTTGTCCCTAATTAATGGGTATGTCTCTGCAGAGAGATATTTCTGTGTTCTGATGTTGTGGAACGAACTTAAGTGGAAGGTTACAGCAAATGGGGAGAGTGGTATCAAACTCGATAGCAACTTGGTTGATGCCTTCCTCTATGCTTTGGTCAAGGGAGGTTTCTTCGATGCCGTGATGCAAGTTGTCGAAAAAACTAAAGATACTAAGATCTTCGTTGATAAGTGGAAATATAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAATTGGCAAAACTAAGGAAGAGGAACCACAGGAAAACGGAATCACTAATTGCTTTCAAGAACTGGGCTGGTCTAAATTCTTGA 1971 42.11 MWKRALYSIHHRSFSSSPEIPSLYSFLQPSLFALNKTPFSRSQQQPTNLPHNQTPQILTPDRIAAAETALHKSLLTGDTDEAWKSFKLLTGSSVFPCKSLTNSLIAHLSSVGDVHNLKRAFASVVFVVERKPEFLDCGSVKALLGSMKCANTATPAISLVKCLFKNRCFVPFSVWGCELVDICRQSGSLIPFLRVFEEICRVVLDERLDFMKPDVNACNAALEGCCYELESVTDAEEVVEMMSVLNLRPDGVSFGALAYLYALKGFEEKIVELEGLMGNFEFACKSLFFGSLVSGYVNSRNFSAVSKTMLRSLKDEGGERVTFDEKTYLKVVQGFVQSGNLKELCTLIVDSKNFESSSEADGGIGFGIINACVSIGWLDKAHNILSEINSQGVSLGLGVYLPILKAYRKERRTAEASQLIMDISSSGIQLDVESYDALIEASMSSQDFQSAFSLFRSMRETRKSDTKASYLTIMTGLMENHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNELKWKVTANGESGIKLDSNLVDAFLYALVKGGFFDAVMQVVEKTKDTKIFVDKWKYKQAFMETHKKLKLAKLRKRNHRKTESLIAFKNWAGLNS 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42461082 42463736 + Sed0000601.1 Sed06g1777 718320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1777 656 Pfam PPR repeat family 506 549 IPR002885 -
Sed06g1777 656 Gene3D Tetratricopeptide repeat domain 76 363 IPR011990 GO:0005515(InterPro)
Sed06g1777 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Sed06g1777 656 NCBIfam pentatricopeptide repeat 506 538 IPR002885 -
Sed06g1777 656 PANTHER BNAC05G43320D PROTEIN 13 655 - -
Sed06g1777 656 Pfam Pentatricopeptide repeat domain 419 470 IPR002885 -
Sed06g1777 656 Gene3D Tetratricopeptide repeat domain 502 654 IPR011990 GO:0005515(InterPro)
Sed06g1777 656 Gene3D Tetratricopeptide repeat domain 366 501 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1777 Sed-Chr6:42461082 Sed07g0434 Sed-Chr7:3236800 3.00E-57 dispersed
Sed06g1777 Sed-Chr6:42461082 Sed09g1110 Sed-Chr9:35142783 8.50E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1777 - - - 0.0