Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1777 ATGTGGAAAAGAGCTCTGTATTCGATTCATCACAGATCGTTTTCATCTTCACCAGAAATCCCATCTCTGTATTCATTTCTCCAACCCTCCCTTTTTGCCCTAAACAAAACCCCATTTTCGCGATCTCAACAACAACCCACGAATCTCCCTCACAATCAAACCCCACAAATCCTAACCCCAGATCGCATCGCCGCCGCGGAAACCGCCCTCCACAAGTCCCTCCTCACCGGCGACACCGACGAAGCGTGGAAGTCCTTCAAACTCCTCACCGGAAGCTCCGTTTTCCCATGTAAGTCCCTCACGAATTCGCTTATTGCACATTTGTCCTCGGTCGGGGACGTTCATAATCTCAAACGGGCGTTTGCGTCTGTTGTGTTTGTTGTTGAGAGGAAACCTGAGTTTTTGGATTGTGGTTCTGTTAAAGCGCTTTTGGGTTCTATGAAATGTGCCAATACGGCTACTCCTGCGATTTCTTTGGTTAAATGTTTGTTTAAGAATCGATGTTTTGTGCCTTTTAGTGTTTGGGGTTGTGAACTTGTTGATATTTGTAGGCAGAGTGGTAGTTTGATTCCGTTTTTGAGAGTGTTTGAAGAGATTTGTAGGGTTGTTTTGGATGAGAGGTTGGATTTTATGAAACCGGATGTTAATGCGTGTAATGCTGCACTTGAGGGGTGTTGTTATGAGCTTGAATCTGTGACGGATGCCGAGGAAGTTGTCGAAATGATGTCGGTTTTGAATCTTCGGCCTGATGGAGTGAGCTTTGGTGCTCTTGCTTATTTGTATGCATTGAAGGGGTTTGAAGAGAAGATTGTTGAGTTAGAAGGTTTGATGGGAAACTTTGAATTTGCATGTAAAAGTCTCTTCTTTGGTAGTTTGGTAAGTGGATATGTTAATTCACGCAACTTTTCTGCGGTTTCGAAGACTATGTTGCGCAGTTTGAAAGATGAAGGTGGGGAACGTGTAACTTTTGATGAAAAAACATATTTGAAAGTAGTTCAGGGATTTGTTCAAAGTGGAAATCTTAAGGAATTGTGTACATTGATTGTTGATTCTAAGAATTTCGAATCTTCATCGGAAGCCGATGGAGGTATTGGATTCGGTATCATTAATGCCTGTGTTAGTATTGGATGGTTAGATAAGGCGCACAACATTCTGAGTGAGATCAATTCCCAGGGAGTTTCTCTAGGCCTTGGAGTCTATCTGCCAATCTTGAAAGCTTACCGTAAAGAGCGTCGAACAGCTGAAGCAAGCCAATTAATCATGGATATTAGCAGTTCCGGGATTCAATTGGATGTAGAGAGTTACGATGCTCTCATAGAAGCATCAATGTCGAGTCAAGATTTTCAGTCTGCTTTTTCTTTGTTCAGGAGTATGAGAGAAACAAGAAAATCTGACACGAAGGCTAGTTATCTAACTATTATGACTGGCTTAATGGAGAATCATAGGCCTGAGTTGATGGCTGCTTTCTTAGACGAAGTTGTCGAGGATCCTCTTGTTGAAGTTGGAACTCATGATTGGAATTCTATTATACATGCCTTTTGCAAAGCTGGAAGGCTCGAGGATGCGAGGAGAACATTCCGAAGAATGAAATTTCTGCAGTTTGAACCAAACGAGCAAACCTTCTTGTCCCTAATTAATGGGTATGTCTCTGCAGAGAGATATTTCTGTGTTCTGATGTTGTGGAACGAACTTAAGTGGAAGGTTACAGCAAATGGGGAGAGTGGTATCAAACTCGATAGCAACTTGGTTGATGCCTTCCTCTATGCTTTGGTCAAGGGAGGTTTCTTCGATGCCGTGATGCAAGTTGTCGAAAAAACTAAAGATACTAAGATCTTCGTTGATAAGTGGAAATATAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAATTGGCAAAACTAAGGAAGAGGAACCACAGGAAAACGGAATCACTAATTGCTTTCAAGAACTGGGCTGGTCTAAATTCTTGA 1971 42.11 MWKRALYSIHHRSFSSSPEIPSLYSFLQPSLFALNKTPFSRSQQQPTNLPHNQTPQILTPDRIAAAETALHKSLLTGDTDEAWKSFKLLTGSSVFPCKSLTNSLIAHLSSVGDVHNLKRAFASVVFVVERKPEFLDCGSVKALLGSMKCANTATPAISLVKCLFKNRCFVPFSVWGCELVDICRQSGSLIPFLRVFEEICRVVLDERLDFMKPDVNACNAALEGCCYELESVTDAEEVVEMMSVLNLRPDGVSFGALAYLYALKGFEEKIVELEGLMGNFEFACKSLFFGSLVSGYVNSRNFSAVSKTMLRSLKDEGGERVTFDEKTYLKVVQGFVQSGNLKELCTLIVDSKNFESSSEADGGIGFGIINACVSIGWLDKAHNILSEINSQGVSLGLGVYLPILKAYRKERRTAEASQLIMDISSSGIQLDVESYDALIEASMSSQDFQSAFSLFRSMRETRKSDTKASYLTIMTGLMENHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNELKWKVTANGESGIKLDSNLVDAFLYALVKGGFFDAVMQVVEKTKDTKIFVDKWKYKQAFMETHKKLKLAKLRKRNHRKTESLIAFKNWAGLNS 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42461082 42463736 + Sed0000601.1 Sed06g1777 718320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1777 656 Pfam PPR repeat family 506 549 IPR002885 -
Sed06g1777 656 Gene3D Tetratricopeptide repeat domain 76 363 IPR011990 GO:0005515(InterPro)
Sed06g1777 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Sed06g1777 656 NCBIfam pentatricopeptide repeat 506 538 IPR002885 -
Sed06g1777 656 PANTHER BNAC05G43320D PROTEIN 13 655 - -
Sed06g1777 656 Pfam Pentatricopeptide repeat domain 419 470 IPR002885 -
Sed06g1777 656 Gene3D Tetratricopeptide repeat domain 502 654 IPR011990 GO:0005515(InterPro)
Sed06g1777 656 Gene3D Tetratricopeptide repeat domain 366 501 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1777 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1777 Sed-Chr6:42461082 Sed07g0434 Sed-Chr7:3236800 3.00E-57 dispersed
Sed06g1777 Sed-Chr6:42461082 Sed09g1110 Sed-Chr9:35142783 8.50E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g39 . . . . . . Bma14g01665 . . Cmo18g01126 . Cma18g01105 . Car18g01019 Sed06g1777 Cpe09g00221 . Bhi07g01488 Tan04g0995 Cmetu10g0618 Lac13g0378 Hepe10g1796 . . Cla05g02392 . . Cco05g2639 Clacu05g2566 Cmu05g2423 Cre05g2540 . . . Cone9ag0542 Lsi04g00362 Csa05g02513 Chy10g01058 Cme10g00357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011716 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 30