Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1778 ATGGGTGAAGCTGGAAGTAGAGGAAAATACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGCAATTCACATGAGGCTCAAGTTGGGGCTTTTAAAGAAGATGAAGATGAGATTGAGCTTAATCTTGGGCTTTCACTTGGGGGTAGGTTTGGGGTTGACAAGAATTCCAAGAAGCTTCTTCGATCTTCGTCGATCGCCGGGACGATGCCGCTTTCGAGGGACGACGAGGGGTCTACTCCTGCTGCGGTGGCCTACCCGGTGATTACTCGAACTTCGTCTCTTCCGGTCGAGACGGAGGAGGAGTGGAGGAAGCGGAAGGAGTTGCAGTCGTTGAGGCGAATGGAGGCGAAGAGGAGGCGGTTCCAGAAGCACAGGAATAAGGATGGGATTGGAATGGGGTCTGGCGAAAGTGAAGGCCTTACTGGATTGAATTTGAGAGAGAAAAGGGATTGTTCGGGTATTTCGATGGTGGCGCCGCCGTTTGGGTTGCCAATGTGGGCTGGAGCTGCTCGACAGGCTCTTGTTGGCGGAACTGGGGATGTTATCGCCAAAGGAAAAGACGGTAGCAGTGGCGATGGCTTGCCGCTTTTCGGACAGCCTGCTTCTCAGTGCTCGGCTGAATCGCACGGTGGAAGCTCGTCGGGGACGTCGGAATTGGACAGCAAACACATTCAAGGATCAAACAGTTGCGGTGAAGCAAGAAGCTCCTCACAAGAACGAAGCCCGGAGGCTGTAGGATCGAAGACACTTGAGAATCCATGTCGCAATTCCAAACCAAAGACAAAAATCCCATCCAAGAAACCAGATTCGGGCGAGAACAAGGGAAGAGAAACGGGAACAGGAACAAGATCGACGTCGATGAAAGACATGCCATGCGTGTTCACGATAGGAGATGGGCCGGAAGGGAGAAGGGTGGATGGAATTCTTTACAAGTATGGAAAAGGGGAAGAAGTGAGGATAATGTGTGTTTGCCATGAGATTTTTCTATCACCAGCTGAGTTTGTGAAGCATGCTGGTGGTAAAAATATGGCTCATCCACTTAGACATATAGTTGTCAATCCTAATTCTGTTCCTTTTCTGTAA 1083 50.05 MGEAGSRGKYPTDLLQRFLCSNSHEAQVGAFKEDEDEIELNLGLSLGGRFGVDKNSKKLLRSSSIAGTMPLSRDDEGSTPAAVAYPVITRTSSLPVETEEEWRKRKELQSLRRMEAKRRRFQKHRNKDGIGMGSGESEGLTGLNLREKRDCSGISMVAPPFGLPMWAGAARQALVGGTGDVIAKGKDGSSGDGLPLFGQPASQCSAESHGGSSSGTSELDSKHIQGSNSCGEARSSSQERSPEAVGSKTLENPCRNSKPKTKIPSKKPDSGENKGRETGTGTRSTSMKDMPCVFTIGDGPEGRRVDGILYKYGKGEEVRIMCVCHEIFLSPAEFVKHAGGKNMAHPLRHIVVNPNSVPFL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42465653 42469376 - Sed0003610.1 Sed06g1778 718321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1778 360 PANTHER AFP HOMOLOG 2 8 355 IPR031307 GO:0005634(PANTHER)|GO:0007165(InterPro)|GO:0009737(PANTHER)|GO:0045892(PANTHER)
Sed06g1778 360 MobiDBLite consensus disorder prediction 115 142 - -
Sed06g1778 360 MobiDBLite consensus disorder prediction 186 291 - -
Sed06g1778 360 MobiDBLite consensus disorder prediction 262 276 - -
Sed06g1778 360 Pfam Tify domain binding domain 319 352 IPR032308 -
Sed06g1778 360 Pfam Ethylene-responsive binding factor-associated repression 33 67 IPR012463 -
Sed06g1778 360 MobiDBLite consensus disorder prediction 201 259 - -
Sed06g1778 360 Pfam Putative nuclear localisation signal in Ninja/AFP proteins 89 123 IPR032310 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1778 Sed-Chr6:42465653 Sed08g2122 Sed-Chr8:35210259 3.10E-19 dispersed
Sed06g1778 Sed-Chr6:42465653 Sed07g2042 Sed-Chr7:35563254 7.00E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1778 - - - 0.0