Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1781 ATGTGTGGAATCGCTTTGATAGTTTCCGGCATTCGCCTTGATTTATCATCTCTAAAAGTCGAATCCAGATCCTCGTTTCCTCATTCAGTTCACGAGCAACTCGAGTTTTCGATCGATGATCTGAAAGCGGCACTGCGGAGAAGAGGGCCGGACAGCTTAGGCGGAGTGAAGGTTCTTATTTCTTCGAATTCTTCTAACCCTAGCGAGGAGAAGAATTTTGAGTGTTTTATTGAGAGGGTTGATGGTGGAGATGCATTCGAGATGGAAAATGGAGGGATTCTCCATTCGCAGAACACTTGCTGTAGTTCCATGTCTGTTGCAGAGTTGTATTTACTAGGAGCCACTTTACAGCTTAGAGGGATTAACCCTATTGTTCAGCCACTGGTAGATGCTTCCCGCAATATTCTTGTTTACAATGGTGAAATATTTGGAGGCTTCCACGTTCGGTGTGATGAAAACGATGCTGAAACTCTTATGTTAGCTCTTGGGAATTGTTGCGCCTGCAATTTTAGTTTAGATAAAAACATATGCAATGGCGAAGGTAAGAGACAAAGCACTATTGTAGATGTTCTTTCTACGATTCAAGGGCCATGGTCAATCATCTACTGGCAGGATAGTGCAAAAACTTTATGGTTCGGTCGGGATGCCTTTGGAAGGCGAAGTCTTCTTGTTCATTGGCCAACTGTGGAGGATTCTCGATTTTTGTTGTCTTCCGTATCACCAGCTTCTTCTGTGTTTCACAACTCTGGGCTTGAAGATGATAATGGTATTTGTGAAGTGAGTTTCTGGGAAGAACTTCCATGTGGGATTTACAGTATCTCTTTTGATGCTCAGAGCATAAATGGTTGCCTGGTTGGTGAAGTCCAAAGGCATGAATGGACCAACGAGTCACTGAAAGAACTTGTCGAGTGGAAGAGAACTCGTATCGTACCTGAACCTGGAGACATCTCCTCTTCATATCACAAGGATCTTTTGTCACAGCATGAAAGCAATTCAGCATGCTTGGAACCAGTATCAGGTAGTATCCAAGCTCCTGTGGAGATTTTGCTGGGTGCGCTGAGAAATTCTGTTATCCGGCGGACTTCACTTTATACAGTTTTCCAGGCTTCAACATATGCTTCCAGAAAAGCAGGACCTGGTCCAGTAGCCATTCTTTTTTCTGGTGGATTGGATTCTATGATACTAGCAGCGTTACTGGATGAGTGCCTAGATACCTGCTATGAGATAGACCTCCTTAATGTCAGTTTTGATGGTTGTTCTGCACCTGATCGAATATCTGCAAAGGCAGGAGTTCAGGAACTGAGAAGAATTGCCCCTCTAAGAAGGTGGAAGCTGGTTGAGATTGATGCTGATTTGCCAAATTTAACCTCTGAAACCAAGCATGTCATGTCTCTAATAAATCCTGCAAATACGTACATGGACCTGAATATTGGAATAGCTTTGTGGCTGGCCTCTGGTGGCAATGGTTGGATTTATGAATCAATTGACAAGAATGAGAAGTCTCATCAACGTGTTAAGTACAAGTCTGAGGCCAAGATTCTTCTTGTTGGTTCTGGTGCCGATGAGCAATGTGCTGGCTATGGTAGGCATCGGACAAAATATAGACAAGGGGGGTAA 1617 43.66 MCGIALIVSGIRLDLSSLKVESRSSFPHSVHEQLEFSIDDLKAALRRRGPDSLGGVKVLISSNSSNPSEEKNFECFIERVDGGDAFEMENGGILHSQNTCCSSMSVAELYLLGATLQLRGINPIVQPLVDASRNILVYNGEIFGGFHVRCDENDAETLMLALGNCCACNFSLDKNICNGEGKRQSTIVDVLSTIQGPWSIIYWQDSAKTLWFGRDAFGRRSLLVHWPTVEDSRFLLSSVSPASSVFHNSGLEDDNGICEVSFWEELPCGIYSISFDAQSINGCLVGEVQRHEWTNESLKELVEWKRTRIVPEPGDISSSYHKDLLSQHESNSACLEPVSGSIQAPVEILLGALRNSVIRRTSLYTVFQASTYASRKAGPGPVAILFSGGLDSMILAALLDECLDTCYEIDLLNVSFDGCSAPDRISAKAGVQELRRIAPLRRWKLVEIDADLPNLTSETKHVMSLINPANTYMDLNIGIALWLASGGNGWIYESIDKNEKSHQRVKYKSEAKILLVGSGADEQCAGYGRHRTKYRQGG 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42477864 42485283 + Sed0024899.3 Sed06g1781 718324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1781 538 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 374 534 - -
Sed06g1781 538 CDD Asn_Synthase_B_C 352 535 IPR001962 GO:0004066(InterPro)|GO:0006529(InterPro)
Sed06g1781 538 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 27 252 IPR029055 -
Sed06g1781 538 Pfam Glutamine amidotransferase domain 126 239 IPR017932 -
Sed06g1781 538 Gene3D HUPs 342 537 IPR014729 -
Sed06g1781 538 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 41 241 IPR029055 -
Sed06g1781 538 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 1 537 IPR051857 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1779 Sed-Chr6:42477864 Sed06g1781 Sed-Chr6:42477864 0.00E+00 dispersed
Sed06g1780 Sed-Chr6:42477864 Sed06g1781 Sed-Chr6:42477864 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1781 - - - 0.0