Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1810 ATGTCATCCAAAGCCACAGCTAGAAGACAGATTTTGGAAAGGCAAACATGTCCTAAAGATAAAGATATAAGGAAAAGCCAAAGCATTTTGTCCAAACACCTTAAGAAAATTTACCCAATTGGGCTGCAAAGAACCAGTTCTTCACTATCTTTCTCTTCACTGTCATTGTCTTTGTCCCAAAATTCAAATGACTCTTCTCTTACAGACACCTCATTCCAACTGGACCGGAAAATTTCGTACGCCATTCGCCTTATTACGCCGCCTCCCGAAAGAAGAGAAGTCCCAATAGCTAAGACTATCCAACCAGTTCAAAGTCAGGAACTTGGTGATGGGGAATTGAGGAGGTGCAACTGGATCACCCATACTAGTGATAAAGCCTATGTATCATTTCATGACGAGTGCTGGGGCGTCCCGGTGTACGACGACAATCGACTTTTCGAGCTACTTGCTCTGGCTGGGATGTTGATGGACTACAATTGGACTGAAATTGTGAAAAGAAGGGAACTTTTTAGGGAAGCTTTTCATGGATTTGAGCCAAGTACAGTTGCCAAAATGGGGGAGAAAGAAATAACAGATATAGCATCTGATAAGGCCATTATGCTGGTGGAGAGCAGAGTGAAGTGCATTGTAGACAATGCCAAATGCATATTGAAGATATCAAGAGATTTTGGATCATTCAGTAACTATATGTGGAGCTATATGAACTTCAAACCAACAATAAACAGATTTAGATATCCAAGAAATGTTCCCCTAAGAACCCCTAAAGCAGAAACCATTAGCAAGGACATGGTGAAGCGTGGTTTTCGGTTCGTTGGGCCAGTGATTGTCTATTCATTCATGCAAGCTGCCGGGTTGACGATTGATCATCTTGTCGATTGTTTTCGGCACGGTGAATGCGTAAATCTTGCAGAAAGACCATGGAGGCACATCTGA 933 42.34 MSSKATARRQILERQTCPKDKDIRKSQSILSKHLKKIYPIGLQRTSSSLSFSSLSLSLSQNSNDSSLTDTSFQLDRKISYAIRLITPPPERREVPIAKTIQPVQSQELGDGELRRCNWITHTSDKAYVSFHDECWGVPVYDDNRLFELLALAGMLMDYNWTEIVKRRELFREAFHGFEPSTVAKMGEKEITDIASDKAIMLVESRVKCIVDNAKCILKISRDFGSFSNYMWSYMNFKPTINRFRYPRNVPLRTPKAETISKDMVKRGFRFVGPVIVYSFMQAAGLTIDHLVDCFRHGECVNLAERPWRHI 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42604136 42607034 - Sed0022309.1 Sed06g1810 718353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1810 310 Gene3D Hypothetical protein; domain 2 113 297 - -
Sed06g1810 310 PANTHER OS04G0501200 PROTEIN 18 301 - -
Sed06g1810 310 SUPERFAMILY DNA-glycosylase 114 300 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
Sed06g1810 310 Pfam Methyladenine glycosylase 122 296 IPR005019 GO:0006284(InterPro)|GO:0008725(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1810 K01246 - - csv:101218195 548.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1810 Sed-Chr6:42604136 Sed07g2018 Sed-Chr7:35108020 1.20E-99 dispersed
Sed01g2605 Sed-Chr1:19927166 Sed06g1810 Sed-Chr6:42604136 4.90E-56 transposed
Sed07g0751 Sed-Chr7:5610675 Sed06g1810 Sed-Chr6:42604136 6.50E-57 transposed
Sed09g1402 Sed-Chr9:37906130 Sed06g1810 Sed-Chr6:42604136 8.20E-60 transposed
Sed06g1810 Sed-Chr6:42604136 Sed07g2017 Sed-Chr7:35108020 3.20E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g998 . Blo16g01074 . Bda11g01165 Bpe13g01363 . . . Cmo04g01646 . . . Car04g01624 . Sed06g1810 . Cpe01g01396 Bhi07g01447 Tan04g0956 Cmetu10g0683 Lac13g0409 Hepe10g1821 . . Cla05g02376 Cam05g2545 Cec05g2577 Cco05g2616 Clacu05g2544 Cmu05g2403 Cre05g2520 . . . . Lsi04g00342 Csa05g02535 Chy10g01078 Cme10g00333 . . . Bda11g01165 . . . Bma06g00746 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009566 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 33