Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1817 ATGATGGATATTGGGGACAGAGATAAATTTAGAGTAGAAAGTGGCACAGAGGGTTGTGTTAACTATTCGCATAGCTTGTCTTCGGATTGGCGATTTGGCAAGACGATGACGCCCACGAGTATGCCGATGGGAATGGTTTTTCCTGGGGATAAGGATATTGTTGGCTGTTCTTCTTCCACTGCTCCTGTGGTAGGGCCATTCAGCTCTTCTATGTGGGAACAAGCAGCTAGTAGTCAAAACTTGGGAATTTGCAAGACTCTAGATCATAAAAATTGTAGTTCTTCAAACATCATTGGTGGTTGTCCAGTTTCTTTGTGCAGTGACATTGATAGAACACTTGACATCAGCTGGAACCTATCACATAATATGTTGAAAGGGGCAGTTTACCTACCTAATATTCCTGGTGCGCTCCCACCGAGCTTATCTCATCTTCCAGCTGATTCTTCGTTTATTGAGCGTGCAGCCAGGCTTTCCTGCTTTAGTGGTGGAAATTTTGGTGATATTGCTGGTCCTTTCAACATTCCTGAGCCTATGGCCATTTTTCCTAGAGGCATGGGAGTAATACCTGAGAGACGGGATAGTATTTTGCCAAATGGGTTAGGTTCGGTATCTGGAACCGGAAGACAGTCTCAAAGAAACTTGGTTAACAGTGAAGCTTCCAAGCCTGTTTCTTTGACTAGTGAACATGGAGCTGCTGAAAAGGGTTCACCTAAAAATGGAAGCCCCTTGGAATTGGATGATCGTGGTAAACATGTTGATGGTTATGCTAATGAATCCGATGAAGCTGAGTTTAGCGGTGGTGATGGTTCGTGTGAGCCGTCTACGTTAGAGGCTGCAGGTAAGGAACTTTTTGCTAAGAGCCTCGGTGCTAGGAAAAGAAAAAGGAGTGGACAGAAGACTGAATTTGATCAAACCAATGGACCTCTGCAACAAACTAATGTTTCAACTAAGGATACTATTGAAACTCAGCAAAAAGGAGATCAAAATCCGATCGCAAACAAGGGTACAGGAAAACATGGTAAACAGTCGTCTCAACCTTCAGGTCCAACGAAAGAAGAGTATATTCATATTCGGGCTCGAAGGGGTCAGGCGACAAACAGCCATAGTCTTGCTGAAAGGGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACTGGCAAGGCAGTGATGCTAGATGAAATCATTAACTATGTGCAATCACTGCAACGACAAGTTGAGTTTTTATCGATGAAACTCGCTACTGTCAATCCAAGGTTGAATATGAACATTGATGGGCTTCTAGCCAAAGATATTCTTCAATCTCGAGTTGGTCCTCCGTCGACATTGGGATTTTCTTCGTATATGCCCGTCGCTTGTCCCCCTGCACATATTTCTCATCATGGACATATCTCAGGCAATTTTCCTGCCGTAGGGAGCTCTGAAAAGTTAAGAAGCACAATAAGTTCTCATATAACTCCTAGGTCTAGTGAATTTATGGAGCCTACTCAGATAAAGAATGTGTGGGATGGTGAACTCCAAAACATTGTGCAAATGAGCTTTGGGATGTCCACTATCCCCAATTGTTTAGAAGTTGAAGGATCTGATTCACCGGGCAATACAAAAGTCGAACCTTGA 1650 43.52 MMDIGDRDKFRVESGTEGCVNYSHSLSSDWRFGKTMTPTSMPMGMVFPGDKDIVGCSSSTAPVVGPFSSSMWEQAASSQNLGICKTLDHKNCSSSNIIGGCPVSLCSDIDRTLDISWNLSHNMLKGAVYLPNIPGALPPSLSHLPADSSFIERAARLSCFSGGNFGDIAGPFNIPEPMAIFPRGMGVIPERRDSILPNGLGSVSGTGRQSQRNLVNSEASKPVSLTSEHGAAEKGSPKNGSPLELDDRGKHVDGYANESDEAEFSGGDGSCEPSTLEAAGKELFAKSLGARKRKRSGQKTEFDQTNGPLQQTNVSTKDTIETQQKGDQNPIANKGTGKHGKQSSQPSGPTKEEYIHIRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLNMNIDGLLAKDILQSRVGPPSTLGFSSYMPVACPPAHISHHGHISGNFPAVGSSEKLRSTISSHITPRSSEFMEPTQIKNVWDGELQNIVQMSFGMSTIPNCLEVEGSDSPGNTKVEP 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42657790 42661657 - Sed0025000.2 Sed06g1817 718360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1817 549 CDD bHLH_AtBPE_like 353 438 - -
Sed06g1817 549 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 141 481 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed06g1817 549 MobiDBLite consensus disorder prediction 287 351 - -
Sed06g1817 549 MobiDBLite consensus disorder prediction 301 350 - -
Sed06g1817 549 MobiDBLite consensus disorder prediction 240 258 - -
Sed06g1817 549 MobiDBLite consensus disorder prediction 199 224 - -
Sed06g1817 549 FunFam Basic helix-loop-helix transcription factor 360 432 - -
Sed06g1817 549 SMART finulus 369 419 IPR011598 GO:0046983(InterPro)
Sed06g1817 549 Gene3D - 360 435 IPR036638 GO:0046983(InterPro)
Sed06g1817 549 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 413 IPR011598 GO:0046983(InterPro)
Sed06g1817 549 MobiDBLite consensus disorder prediction 198 275 - -
Sed06g1817 549 Pfam Helix-loop-helix DNA-binding domain 366 414 IPR011598 GO:0046983(InterPro)
Sed06g1817 549 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 432 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1817 Sed-Chr6:42657790 Sed06g1819 Sed-Chr6:42657790 8.9e-313 dispersed
Sed06g1816 Sed-Chr6:42657790 Sed06g1817 Sed-Chr6:42657790 0.00E+00 tandem
Sed06g1817 Sed-Chr6:42657790 Sed06g1818 Sed-Chr6:42657790 8.9e-313 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38906 PF00010 HLH 6.10E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1817 - - - 0.0