Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1824 ATGAAAGCTGAGGGTCTAGGTTTACACAGCCTTCCTCTTCCGCACCCAGTGAGGCCTTTTGTCAGAGCTTCTTTCCCGCCATTAAAGCTCTTCTCAACTTTCGCTTTCCTTCCCAAAGGTTCTCGCCAACCGGCCTCCTTTCGCTTGCCTCCGAACTCCTGCTTCAAGGGTGTGCGATTTGACAGTCCAGTATTGGGTGTGACGGAGTTATCCGAGCTTGAGGATGTGGATTTGGTGGTGGATATGTGCATTACGCGTACGTTGCCACCGACTTTGACGCTTAGGCAGGGGCTGGAGAGCATAAGTGAGGCTGTTGAGAAGTTGAAGTTAGAACCTCCACGTTCTTCTAGTGGAATTTTTAGGTTTCAGGTGGCTGTTCCCCCGAGTGCAAAAGCTCTTATGTGGTTCTGTTGTCAACCAGAATCATCTGAAGTGTTTCCTGTCTTTTTTCTTTCCAAGGAGAAGGATGCGACGATTAAGTCACTCTACTTGAATGATACTCGTGGAGTTTTTGGAATTGGTACTGCAATTTACTTTGCAAGCTTGTCTTCTACTTCATCAAAACAAAGTTTATTGAAAAGGTATCTCATAAATGATTCAGCTCCTATTATGGCTTATGGTGTTAATGACGATACTGCGGAGACATCTCTACTGAAGAATGAGAGTGGTCATTCATACTTTTGCATTCCCCAAATTGAGTTAAGTGAGTATGAGGGCGTTTCTATTCTCTCCGCAACACTTGCATGGAGTGAACCTTTCCCTTGTACATTTGAGGAAGCTCTTCATTCTTTGGGCTTATCAATGCACCAGATCAATGCTAATTTTCCATCCAGAGAGAATTGCCAGAACAAATATATAAGATCTTCTTTAACAGCTTTAAAACTTGTGGACAGAACACTTCAGATGGCATACATGAAGGTATTTTCGGTGGCTGGGGAAACTTTCAGGAATGGCATCATGGAAATGGAGTCAACAATCTCCCATCAATTCTGCATTAGGCTTTCACCAAGTGTTGCTGTTGCATGTAATATGTTGGATCATATCAACAAAACTTGTTGCGCAGAGCAAGAGCATGACAACATTAATGCTCTCTGGGCCTCACTCATAGTTGAAGAATGTTCTCGTCTTGGTTTGACGTACTTTTGCATAGCTCCTGGATCAAGATCATCCCCTCTTGCCATTGCTGCTGCAAGTCATCCCCAAATAACATGTATTGCATGCTTTGATGAACGCTCTCTTGCTTTTCATGCAATTGGGTACGCAAAAGGATCACATAGCCCAGCAGTTGTAATCACATCATCGGGCACTGCTGTTTCAAATCTTTTTCCTGCTGTTGTTGAAGCTAGTCAAGATTTTCTTCCTCTTTTATTACTCACAGCTGACCGCCCTCCGGAGCTTCAGGATGCAGGAGCAAATCAAGCTATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTTTTCTTCAATCTTCCTGCCCCAACCGATCAAATTCCTGCCAGAATGGTACTTACCACTCTTGATTCTGCTGTACATTGGGCAACCTCTTCACACTGTGGCCCCGTGCACATAAATTGTCCATTTAGAGAGCCTCTGGAAAATAGTTCTAGTCCATGGAATTTGAGTTGCTTAAATGGATTGCATATTTGGTTATCAAGCTATGAAGCTTTTACCAAATATATTCAACTTGAAACTTCTCCATTGTCTATTGATACTTTTGGCCATATGGCAGAGGTTTTGAAAATAATCCACGGAGCCAGAAATGGAATTCTACTACTTGGATCAATTCACTCAGAAGATGAGATATGGGCTGCTCTTCTATTGGCCAAACATATTTCATGGCCTATAGTAGCTGATGTATTGTCTGGTTTACGGATGAGGAAGAGTTTGTCTTCCTTCCTAGAAATGGAAAAGAACTTTTTCTTTGTCGATCACCTTGATAATGCATTACTTTCTGATTCAGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGATTGGAAGCAGGTTAACAAGCAAACGTGTTTCAAAGATGCTCGAGGACTGCACTCCCTGTTCATACATCATGGTTGATGAGCATCCAGGTCGTCATGATCCATCACATATTGTGACCCATAGAATTCAGAGCACCGTTTTAGAATTTGTGGGTTGTTTACTTAAAGCTGGTTTTCCTCACAACAGGAGCAAGTGGACTGCTACTTTACAAGCATTGAATAAGATGATTGAGTGGGAGATACAGTTTCAAATTTCTGCTAACTACTCTCTATCTGAGCCACAAGTTGCTCAGGTAATCTCAGAGGCACTTCCATTAGATTCTGTTCTGTTCTTGGGGAACAGCATGCCAATCCGTGACGTAGACATGTATGCATATGGTTGGTCAAAACGCAACGACAGTGTAGCAGCTAAACCATTTAACTTACAACTGCCATTTTGCTGGACATGGACTTCCGGAAATAGGGGAGCTAGTGGAATTGACGGTCTCCTTAGCACAGCTATTGGTTTTTCTGTTGGCTGCAACAAGCGAGTGCTTTGTGTAGTTGGAGATGTTTCTTTCCTTCATGATACAAATGGCTTGGCAATTTTGAACCAGAGGATGACGAGGAAACCTGTGACTGTTGTTGTGATCAATAATAAAGGTGGGGCAATCTTCAGCCTTCTTCCTATCAAGGACCGAGTAGATTCAGCAATTCTAGACCAGTACTTCCACACCTCTCACAAGATTTCACTCCATAGCCTATGTGTGGCGCATGGCCTGAAGCACTTACATGTACGGACAAAGATGGAGCTTCAAGATGCTTTATATATGTCTCAACGTGAAGAAAATGACTGTATAATTGAGGTTGAAAGTTCCATTGATGCCAATACTACCTTCCACAGTATCTTGAGGAAGTTCTCTGGTCAAGCAGCAGATGATGGTTTACGCATCTTTTCAAGGCTCTATTTTGAAGAATCTGTTTCACCTGGACTCTCTCTTTGCAAAATAAGTAGAATGGACTACACATTGTTCAGAATTCCACTATGTGCTCCACCTACGACTACATCTAATTCTATTGACCACGTCAGTCGGAAGGTCTTCAGAGAAGGTTTCATTTTGTCTTTGTTTCTTGAGGACGGGAGTCTTGGGCTTGGTGAGGTTTCACCCCTTGATATCCACAGAGAGAACCTACTAGATGTGGAAGAGCAACTTAAATGTCTTCTTTATGTATTAAAGGGAACCAAGATCAGCAGCTCCATTTCTCTACTACGGGCCTCATTTTCATCTTGGATTTTTTATGAACTTGGAATCCCACCGAGTTCAATCTATCCAAGTGTTAGATGTGGTTTGGAAATGGCCATCCTCAATGCCATAGCAGGGAGAAAAGGTTGCAGCTTGTTAAATGTACTTCAACATCAGTTAGATGAAGAAAACACCTTGACATCTTCGTCAAAAGTTCAAATTTGTGGGCTGTTGGATTCTGGTGGAACGCCCTCTGAGGTTGCTCATCTTGCTAAGACACTGGTTGAAGAAGGGTTTACTGCTATCAAGTTAAAGGTAGCCCGACAAGGAAATGTCATGTATGATGCTGCAGTCGTACAGGAAGTAAGGAAGAAGCTTGGCACCCAGATTGATCTCCGTGTTGATGCTAATCAGAACTGGAGCTATGAGGAAGCTATTCTATTTAGTTCTTTGGTGAAGGACTGTGGCCTGCAATACATTGAGGAACCAGTTATGGATGAAGATGCTATTGTCAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTATCGATCATATTCAAGATAATCCTATGGAAGAACTGGAGAAGTATATTCATCCAGGAATTGTTGCTATAGTTATAAAACCCAGTGTCGTTGGCGGATTTGAAAATACAGCATTAGTAGCAAGGTGGGCACACCAACACGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCTGGATATATACAGTTAGCCAGTTATCTGGAGCTTCAGAATGCAGAACTAAGAAATCTGATGAATATTCAACCAGCCCCATCTATAGCCCACGGTCTAGGAACTTACCGTTGGCTTGAAGAAGATGTGACTATCAATCCTCTCAGAATTTGTCGTGACCCTCATAGTGGCATTATAGAAGCATCTGTCGCTGAAGCTAATCGACTTCTAAAGAGTTTTCAAATGAACCAGAAGTTTGTTTGTAGAAAATTTACTGAAGAGCAAGTTCGTAGGTACCAATTAACCGTAGATTTAAAGGGGTTCTCTTATTTAATACAAGTTCTAGAGGTTGGACAAAGAACAAACGAGAATGTGCTCTTGTTTCTTCATGGATTTCTTGGAACTGGTGAAGACTGGATTACAATTATGAAAGCCATCTCAGGTTCAGCCAGATGCATTTCTCTTGACCTTCCCGGTCACGGTGGATCAACAACACAAAAGAATGATTGTGATGTTCATGATGTGGAGGAACCAAGTCTTACCATGGAGGTTGTTGCTAATCTACTGTATAAGTTGATTCATCATCTAGCTCCTGGAAAAGTTAATATTGTAGGTTATTCAATGGGAGCTAGAATTGCCATGTACATGGCCTTGAGATTTGGCGACAAGATTGGAAGAGCTGTTATAATATCTGGAAGCCCTGGATTAAAAGACAAGATGGCAAGAAGAATCCGTAGAGTTAAAGATGATTCTAGAGCACAAATCCTTAAGGATTACGGTTTACAAAGCTTCCTCGAGGCGTGGTATTGTGGGGAACTATGGAAAAGTTTAAGAGAACATCCACATTACATTCAAATTATTGCCAGCAGATTGCAGCATGATGATGTCCACCTTCTTGCAAAAGCTCTGTCTGATTTAAGCATTGGAAGGCAGCCGCAATTGTGGGATGAATTGAAATTCTGCAAAACACCTCTTTCAATCATTGTTGGGGAGAAGGATACAAAATTCAAGACAATCGCACAGCAAATTCTATCTCAGATTGATATGGGCAGGAAGATCAAGGGTGAACCAGTTGTTCAGCTCCATGAAATAGTTGAGATCCCTGACTCTGGACATGCTGCCCATCTGGAGAATCCTCTTGCTGTTATCAATGCATTAAGTAGATTTTTAATAAGGAGTAGAACACAGTTCTCTTACAGTTCGGATTCCGCAGATCTTGGGTTGGAAAAATTGATTGAAATATTCAAGAAGTTGCCTGGTTAA 5205 41.77 MKAEGLGLHSLPLPHPVRPFVRASFPPLKLFSTFAFLPKGSRQPASFRLPPNSCFKGVRFDSPVLGVTELSELEDVDLVVDMCITRTLPPTLTLRQGLESISEAVEKLKLEPPRSSSGIFRFQVAVPPSAKALMWFCCQPESSEVFPVFFLSKEKDATIKSLYLNDTRGVFGIGTAIYFASLSSTSSKQSLLKRYLINDSAPIMAYGVNDDTAETSLLKNESGHSYFCIPQIELSEYEGVSILSATLAWSEPFPCTFEEALHSLGLSMHQINANFPSRENCQNKYIRSSLTALKLVDRTLQMAYMKVFSVAGETFRNGIMEMESTISHQFCIRLSPSVAVACNMLDHINKTCCAEQEHDNINALWASLIVEECSRLGLTYFCIAPGSRSSPLAIAAASHPQITCIACFDERSLAFHAIGYAKGSHSPAVVITSSGTAVSNLFPAVVEASQDFLPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPAPTDQIPARMVLTTLDSAVHWATSSHCGPVHINCPFREPLENSSSPWNLSCLNGLHIWLSSYEAFTKYIQLETSPLSIDTFGHMAEVLKIIHGARNGILLLGSIHSEDEIWAALLLAKHISWPIVADVLSGLRMRKSLSSFLEMEKNFFFVDHLDNALLSDSVRKWLKFDVIIQIGSRLTSKRVSKMLEDCTPCSYIMVDEHPGRHDPSHIVTHRIQSTVLEFVGCLLKAGFPHNRSKWTATLQALNKMIEWEIQFQISANYSLSEPQVAQVISEALPLDSVLFLGNSMPIRDVDMYAYGWSKRNDSVAAKPFNLQLPFCWTWTSGNRGASGIDGLLSTAIGFSVGCNKRVLCVVGDVSFLHDTNGLAILNQRMTRKPVTVVVINNKGGAIFSLLPIKDRVDSAILDQYFHTSHKISLHSLCVAHGLKHLHVRTKMELQDALYMSQREENDCIIEVESSIDANTTFHSILRKFSGQAADDGLRIFSRLYFEESVSPGLSLCKISRMDYTLFRIPLCAPPTTTSNSIDHVSRKVFREGFILSLFLEDGSLGLGEVSPLDIHRENLLDVEEQLKCLLYVLKGTKISSSISLLRASFSSWIFYELGIPPSSIYPSVRCGLEMAILNAIAGRKGCSLLNVLQHQLDEENTLTSSSKVQICGLLDSGGTPSEVAHLAKTLVEEGFTAIKLKVARQGNVMYDAAVVQEVRKKLGTQIDLRVDANQNWSYEEAILFSSLVKDCGLQYIEEPVMDEDAIVKFCEESGLPVALDETIDHIQDNPMEELEKYIHPGIVAIVIKPSVVGGFENTALVARWAHQHGKMAVVSAAFESGVGLSGYIQLASYLELQNAELRNLMNIQPAPSIAHGLGTYRWLEEDVTINPLRICRDPHSGIIEASVAEANRLLKSFQMNQKFVCRKFTEEQVRRYQLTVDLKGFSYLIQVLEVGQRTNENVLLFLHGFLGTGEDWITIMKAISGSARCISLDLPGHGGSTTQKNDCDVHDVEEPSLTMEVVANLLYKLIHHLAPGKVNIVGYSMGARIAMYMALRFGDKIGRAVIISGSPGLKDKMARRIRRVKDDSRAQILKDYGLQSFLEAWYCGELWKSLREHPHYIQIIASRLQHDDVHLLAKALSDLSIGRQPQLWDELKFCKTPLSIIVGEKDTKFKTIAQQILSQIDMGRKIKGEPVVQLHEIVEIPDSGHAAHLENPLAVINALSRFLIRSRTQFSYSSDSADLGLEKLIEIFKKLPG 1734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42690958 42709115 - Sed0018972.1 Sed06g1824 718367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1824 1734 SUPERFAMILY Enolase C-terminal domain-like 1153 1372 IPR036849 -
Sed06g1824 1734 SUPERFAMILY Enolase N-terminal domain-like 994 1128 IPR029017 -
Sed06g1824 1734 SFLD o-succinylbenzoate synthase 995 1372 - -
Sed06g1824 1734 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 359 966 IPR004433 GO:0009234(InterPro)|GO:0030976(InterPro)|GO:0070204(InterPro)
Sed06g1824 1734 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 828 943 IPR011766 GO:0003824(InterPro)|GO:0030976(InterPro)
Sed06g1824 1734 SUPERFAMILY DHS-like NAD/FAD-binding domain 521 744 IPR029035 -
Sed06g1824 1734 Gene3D - 996 1136 IPR029017 -
Sed06g1824 1734 SUPERFAMILY alpha/beta-Hydrolases 1426 1704 IPR029058 -
Sed06g1824 1734 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 755 948 IPR029061 -
Sed06g1824 1734 NCBIfam o-succinylbenzoate synthase 1026 1336 - -
Sed06g1824 1734 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 359 535 IPR029061 -
Sed06g1824 1734 Gene3D - 755 965 - -
Sed06g1824 1734 SFLD muconate cycloisomerase 995 1372 - -
Sed06g1824 1734 Gene3D - 1137 1377 IPR036849 -
Sed06g1824 1734 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 367 478 IPR012001 GO:0030976(InterPro)
Sed06g1824 1734 NCBIfam 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 365 836 IPR004433 GO:0009234(InterPro)|GO:0030976(InterPro)|GO:0070204(InterPro)
Sed06g1824 1734 Gene3D - 357 553 - -
Sed06g1824 1734 Pfam alpha/beta hydrolase fold 1438 1548 IPR000073 -
Sed06g1824 1734 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 103 1708 - -
Sed06g1824 1734 Pfam Middle domain of thiamine pyrophosphate 586 777 IPR032264 -
Sed06g1824 1734 CDD TPP_PYR_MenD 367 528 - -
Sed06g1824 1734 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 1205 1236 IPR018110 GO:0009063(InterPro)
Sed06g1824 1734 Pfam Enolase C-terminal domain-like 1160 1331 IPR029065 -
Sed06g1824 1734 CDD TPP_SHCHC_synthase 756 951 - -
Sed06g1824 1734 Gene3D alpha/beta hydrolase 1430 1704 IPR029058 -
Sed06g1824 1734 Gene3D - 573 748 - -
Sed06g1824 1734 SMART MR_MLE_2 1157 1253 IPR013342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1824 K14759 - - csv:101217012 2914.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1018 . . . . . . . . Cmo04g01637 . . . . . Sed06g1824 . . Bhi07g01422 Tan04g0939 Cmetu10g0984 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37