Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1826 ATGGCGTCTTCTCCCACTCCCATCTCTCCACTATCTTTTCCCAATTCAAGATCAAAGCCAAAACCTATCAAATCGCCGACTTCATTGCCGCCTGCGTGGAATCCACGCCCCAAATCTACGCCCAAGGAGCTTCACTTCAACCGCGATGGTTCCGCCTTGAAAAAGCTTCAGGTCGGCGTTGATTTGGTGGCGGAGTTGGTTGGTGTTACGTTAGGGCCTAAGGGGAGGAATGTGGTGCTTCAGAATAAATATGGACCGCCGAAGATCGTCAACGATGGTGAAACTGTTCTTAAAGAGATCGAGTTGGAAGACCCTTTAGAGAACGTTGGGGTGAAATTGGTGAGGCAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCATCCTTGCACAGGGATTGATTGCTGAGGGTATGAAGGTTATTTCATCTGGCATGAATCCTGTTCAAATTGCACGTGGGATTGAGAAGACTGCAAATGCACTAGTTTCTGAGCTGAAACTGATGTCAAGAGAGGTTGAAGATCATGAGATAGCACATGTTGCTGCAGTTAGTGCAGGGAATGATCATGCAGTGGGAAATATGATTTCTGATGCCTTACGTCAAGTTGGAAGGAAAGGAGTGGTCCAAATCGAAAAGGGGAAGAGTATCGATAACAGTCTGCAAATTGTTGAAGGGATGCAATTTGATCGTGGATATTTGTCACCGTACTTTGTCACCGACAGACAGAAGAGGATAGCAGAATTTCATGATTGCAAGTTACTGTTGGTCGACAAAAAAATCTCCGACCCAAAGGAGATGTTTAAAATATTGGACAGTGCAGTGAAAGAGAAATATCCAATTGTGATATTGGCAGAGGGCATTGAGCCGGAAGCTCTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCTGCTATCAAGGCTCCTGCCTTTGGCGAGCGCAAGAGTCACTACTTAGATGACATAGCGACCTTAACTGGAGCAACTGTTATCAGAGAAGATAGTGGATTGACTTTAGAAAAGACAGGCAAAGAGGTGTTGGGCTCTGCTACTAAGGTTGTTATATCAAAGGATTCCACACTTATAGTGACAGATGGGAGTACACGGGAAGCAGTTCAAAAAAGGGTTTTACAAATTCAAAAGCTTATGGAGAATACTGAGGAAAAATTGCCTAAGAAGATATTGAATGAGAGAATCGCTAGATTATCTGGGCGAATAGCTATACTTCAGGTAGGAGCACAAACTCAAGTTGAGTTGAAGGATAAACAGTTAAGGATTGAGGATGCCTTGAATGCATCAAAGGCTGCAATTGAAGAAGGCGTCGTCGTTGGTGGTGGTTGCTGTCTTTTAAGGCTGTCTACCAAGGTAGATGATATAAAGAATGTCTTGGAAAATGAAGAACAGATGGTATTTCTCCTGGTTTACTTAAAAAACATATCAACTAGGATATTACCTGAACTAATATGA 1494 43.51 MASSPTPISPLSFPNSRSKPKPIKSPTSLPPAWNPRPKSTPKELHFNRDGSALKKLQVGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVILAQGLIAEGMKVISSGMNPVQIARGIEKTANALVSELKLMSREVEDHEIAHVAAVSAGNDHAVGNMISDALRQVGRKGVVQIEKGKSIDNSLQIVEGMQFDRGYLSPYFVTDRQKRIAEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGIEPEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTEEKLPKKILNERIARLSGRIAILQVGAQTQVELKDKQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDDIKNVLENEEQMVFLLVYLKNISTRILPELI 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42710036 42716799 - Sed0002818.2 Sed06g1826 718369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1826 497 Coils Coil 428 448 - -
Sed06g1826 497 CDD GroEL 42 479 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Sed06g1826 497 Pfam TCP-1/cpn60 chaperonin family 63 480 IPR002423 GO:0005524(InterPro)
Sed06g1826 497 Gene3D - 51 477 IPR027413 -
Sed06g1826 497 SUPERFAMILY GroEL equatorial domain-like 48 268 IPR027413 -
Sed06g1826 497 ProSitePatterns Chaperonins cpn60 signature. 444 455 IPR018370 GO:0005524(InterPro)|GO:0006457(InterPro)
Sed06g1826 497 SUPERFAMILY GroEL-intermediate domain like 399 448 IPR027410 -
Sed06g1826 497 Gene3D - 177 449 IPR027410 -
Sed06g1826 497 Coils Coil 458 478 - -
Sed06g1826 497 MobiDBLite consensus disorder prediction 1 42 - -
Sed06g1826 497 Gene3D GroEL 231 412 IPR027409 -
Sed06g1826 497 SUPERFAMILY GroEL apical domain-like 224 415 IPR027409 -
Sed06g1826 497 Coils Coil 378 398 - -
Sed06g1826 497 PRINTS 60kDa chaperonin signature 389 414 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Sed06g1826 497 PRINTS 60kDa chaperonin signature 123 150 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Sed06g1826 497 PRINTS 60kDa chaperonin signature 437 458 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Sed06g1826 497 PRINTS 60kDa chaperonin signature 67 93 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Sed06g1826 497 PRINTS 60kDa chaperonin signature 307 330 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Sed06g1826 497 MobiDBLite consensus disorder prediction 1 23 - -
Sed06g1826 497 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 39 479 IPR001844 GO:0006457(PANTHER)|GO:0009570(PANTHER)|GO:0042026(InterPro)|GO:0140662(InterPro)
Sed06g1826 497 FunFam 60 kDa chaperonin 231 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1826 K04077 - - csv:101209342 820.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1826 Sed-Chr6:42710036 Sed08g0970 Sed-Chr8:9047947 3.20E-168 dispersed
Sed06g1825 Sed-Chr6:42710036 Sed06g1826 Sed-Chr6:42710036 9.70E-265 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67