Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1834 ATGGCAATTAAATCAGAACTTTCCATTTTATTCTTCTTCTTTTGCTTATGGAATTCTTCTGTAAATGGTTTACTTACTGCAAAAGGTGTCAATTATGAAGTACAAGCTTTGATGGCCATTAAATCAGCTCTGAAAGATCCACATTTTGTTCTTAATTGGGATGAAAATGCTGTGGATCCATGTAGCTGGAGCATGATCACTTGTTCTTCAGAGAAATTTGTCATTAGTTTAGGATCTCCCAGTCAGAACTTGTCCGGTAGCCTGTCGCCGAGCATCGGAAATTTGACCAATCTTCAGTCTGTGCTTCTACAAGACAACAATATATCAGGAACAATCCCAATGGAGATTGGAAACATACCTGTGCTTGAAACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCATTTCTCTTTCACATCTTAAGAGTTTGCAGTATCTGAGGCTAAACAACAATAGTCTTTCTGGGACAATTCCTTCATCTTTGGCCAATATGACTCAATTGTCATTGTTGGACCTGTCTTTTAATAATCTGAGTGGCCCATTGCCCAAATTGTTAGCTAAAACCTACAACCTTGCTGGGAATTCTCTCATTTGCTCACTTGGGTCTGAGCATATCTGCAATGGAACTGCTCCACCACTCTTATTTGGAGTTAATGCTCCTCAAAATCCACAACCTACAGGGAGATCCAAGGGCCACAAATTAGCCTTGGCTTTTGGGTCAAGCCTTGGATGTGTTTTTCTGCTAACTGTTGGGTATGGCTTCGTCATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTCGATGTTAATGAACAACAATTCGAGGAAGTTTGCTTGGGGAACCTAAAGATTTTTCCTTTCAGAGAGCTTCAAGCTGCCACAAAAAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGGTTTGGGAATGTATACAAAGGGTACCTTCAAGATGGAACAGTTATAGCTGTTAAGAGACTAAAGGATGGAAATGCAATGAGGGGAGAAGTCCAATTTCACACTGAGGTTGAGATGATCAGCCTAGCCGTGCACCGAAACCTCCTCCGTCTCTACGGGTTTTGCATGACCACCACGGAGAGACTGTTGGTTTACCCTTATATGTCCAATGGCAGCGTCGCATCCCGTCTCAAAGCAAAGCCAGGTCTGGATTGGAGCACAAGGAAAAGAATAGCATTAGGAGCAGCAAGGGGCTTACTGTATTTGCATGAGCAGTGTGATCCTAAGATCATACACAGAGATGTCAAAGCTGCAAACATTTTGCTTGATGATTATTATGAAGCAGTGGTGGGAGATTTTGGATTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACAACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAATATCTCTCCACTGGCCAATCCTCTGAGAAAACTGATGTATTTGGATTTGGAATCCTTCTTCTTGAGCTGATCACTGGACAGAGAGCTCTGGAATTTGGAAAAGCTGCAAATCAGAAAGGAGCTATGCTTGATTGGGTAAAGAAAATTCACAAAGAAAAGAAGCTGGAAACATTAGTTGACAAAGATCTAAGGAACGACTATGACTTGATCGAACTCGAAGAGATGGTTCAAGTGGCCCTCTTGTGCACACAATATCTTCCAACCACCAGACCTAGGATGTCTGAAGTAAGGGCAGAGGCAAACAGGTATAAAGTCAACGTGTTCTCTTCCGAGCGATATTATGACCTTACGGATGATTCTTCCCTGCTTGCACAATTCAAGGATTATTCTGAGGCCATTTATTAA 1815 42.26 MAIKSELSILFFFFCLWNSSVNGLLTAKGVNYEVQALMAIKSALKDPHFVLNWDENAVDPCSWSMITCSSEKFVISLGSPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMEIGNIPVLETLDLSSNGFHGEIPISLSHLKSLQYLRLNNNSLSGTIPSSLANMTQLSLLDLSFNNLSGPLPKLLAKTYNLAGNSLICSLGSEHICNGTAPPLLFGVNAPQNPQPTGRSKGHKLALAFGSSLGCVFLLTVGYGFVIWWRQRHNQQIFFDVNEQQFEEVCLGNLKIFPFRELQAATKNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEVQFHTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPGLDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYYEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHKEKKLETLVDKDLRNDYDLIELEEMVQVALLCTQYLPTTRPRMSEVRAEANRYKVNVFSSERYYDLTDDSSLLAQFKDYSEAIY 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42769520 42774559 - Sed0003537.1 Sed06g1834 718377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1834 604 Gene3D Ribonuclease Inhibitor 30 211 IPR032675 -
Sed06g1834 604 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Sed06g1834 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1834 604 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 211 - -
Sed06g1834 604 SUPERFAMILY L domain-like 33 199 - -
Sed06g1834 604 ProSiteProfiles Protein kinase domain profile. 301 574 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1834 604 FunFam Somatic embryogenesis receptor-like kinase 1 378 570 - -
Sed06g1834 604 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Sed06g1834 604 Gene3D Transferase(Phosphotransferase) domain 1 378 582 - -
Sed06g1834 604 SMART serkin_6 301 574 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1834 604 Pfam Leucine Rich Repeat 97 118 IPR001611 GO:0005515(InterPro)
Sed06g1834 604 FunFam Somatic embryogenesis receptor kinase 1 270 377 - -
Sed06g1834 604 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 569 - -
Sed06g1834 604 SUPERFAMILY Protein kinase-like (PK-like) 280 568 IPR011009 -
Sed06g1834 604 Pfam Protein tyrosine and serine/threonine kinase 304 567 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1834 604 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524(InterPro)
Sed06g1834 604 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1834 Sed-Chr6:42769520 Sed11g2070 Sed-Chr11:34677154 2.50E-199 dispersed
Sed06g1834 Sed-Chr6:42769520 Sed06g1839 Sed-Chr6:42810567 8.60E-67 proximal
Sed06g1834 Sed-Chr6:42769520 Sed07g2002 Sed-Chr7:34982001 1.80E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79384 PF00069 Pkinase 2.60E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1834 - - - 0.0