Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1839 ATGGGGTTTACATTATGCCATCCTTTAAGGACTCCTCACCTAAGTCAGGTTCATTCCACACTTCACCAAGACGGACATGCCAGTGGTGGAACATACTCTCCAAAAGAGCTTGGTGGGTTTGGGAATTCAAGGTCATTATTTACATATGAAGAACTCTTCAAAGCAACAAATGAATTTTCTACACACAATCTTTTGGGAGAAGGTGGATTTGGCTCTGTTTATAAAGGAAATCTACCAGATGGAAGAGAGGTTGCTGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGCGAGCAGGAGTTCAAGGCTGAAGTCGAGATTATCGGTCGCGTACACCACCGCCATTTGGTTTCGCTTGTGGGTTACTGCATCTTAGACCATCAAAGGTTGCTTGTCTATGATTATGTCCCTAACAATTCCCTTTACTACCATCTTCATGTTAAAGGGGACGACCAGCTCGTTCTAGACTGGGAAAAACGCATTAAGATTGCAGCTGGTGCAGCCCGGGGAATAGCTTATCTTCACGAAGACTGCCATCCTCGAATTATCCATCGAGATATCAAGTCTTCAAACATTCTCCTCGACGAAAACTTTGAAGCTCGGGTTTCAGACTTTGGGCTAGCTAAATTGGCTCTTGATGCACAAACTCATATAACCACCCGTGTCGTTGGAACTTTCGGATATGTTGCCCCTGAATATGCATCGAGCGGAAAGTTAACTGAGAGATCAGATGTATATTCTTTTGGAGTCGTACTTCTCGAGCTGATTACTGGTCGGAAAGCTGTCGACGCATCCCAACCAATGGGGGACGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCACGTGCTCGATAGCCAAGATTTCGAAGCATTGGTGGACCCGAGGCTGGAAAGGAACTATGTCGAAAGTGAAATGCTGAAGATGATAGGAATAGCTGCTGCTTGTGTTCAGTATGCATCTGCGAAGAGACCGCAGATGGGACAGGTTGTTCGAGCTTTCAACAATTTAGTCGATACAGATTTAAGTAATGGAATGAGATTTGGGGAGAGTCGAACTTTCGACTCCGGTCAAAAGTCCGCGGAGTTTAGATTTATCCAAATGCTGGCATTTGGAAACCAAGATTACAGTTCAGATTTTTATAGCCAAGGTAGCTCAAATGTCTGA 1167 44.99 MGFTLCHPLRTPHLSQVHSTLHQDGHASGGTYSPKELGGFGNSRSLFTYEELFKATNEFSTHNLLGEGGFGSVYKGNLPDGREVAVKELKIGGGQGEQEFKAEVEIIGRVHHRHLVSLVGYCILDHQRLLVYDYVPNNSLYYHLHVKGDDQLVLDWEKRIKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDAQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGDESLVEWARPLLNHVLDSQDFEALVDPRLERNYVESEMLKMIGIAAACVQYASAKRPQMGQVVRAFNNLVDTDLSNGMRFGESRTFDSGQKSAEFRFIQMLAFGNQDYSSDFYSQGSSNV 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42810567 42816044 + Sed0012687.1 Sed06g1839 718382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1839 388 CDD STKc_IRAK 65 337 - -
Sed06g1839 388 FunFam Proline-rich receptor-like protein kinase PERK8 31 134 - -
Sed06g1839 388 ProSiteProfiles Protein kinase domain profile. 59 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1839 388 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Sed06g1839 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1839 388 Gene3D Transferase(Phosphotransferase) domain 1 135 353 - -
Sed06g1839 388 FunFam proline-rich receptor-like protein kinase PERK8 135 348 - -
Sed06g1839 388 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 43 344 IPR047117 -
Sed06g1839 388 SUPERFAMILY Protein kinase-like (PK-like) 43 342 IPR011009 -
Sed06g1839 388 SMART serkin_6 59 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1839 388 Pfam Protein kinase domain 60 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1839 388 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1839 Sed-Chr6:42810567 Sed07g1970 Sed-Chr7:34482553 1.30E-185 dispersed
Sed08g2395 Sed-Chr8:37122586 Sed06g1839 Sed-Chr6:42810567 1.00E-53 dispersed
Sed12g0163 Sed-Chr12:927919 Sed06g1839 Sed-Chr6:42810567 2.20E-76 dispersed
Sed12g1347 Sed-Chr12:10476854 Sed06g1839 Sed-Chr6:42810567 1.20E-62 dispersed
Sed12g1981 Sed-Chr12:30783025 Sed06g1839 Sed-Chr6:42810567 4.00E-62 dispersed
Sed13g0188 Sed-Chr13:1235139 Sed06g1839 Sed-Chr6:42810567 4.20E-76 dispersed
Sed06g1834 Sed-Chr6:42769520 Sed06g1839 Sed-Chr6:42810567 8.60E-67 proximal
Sed06g1839 Sed-Chr6:42810567 Sed06g1840 Sed-Chr6:42810567 3.20E-216 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79385 PF00069 Pkinase 1.00E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1839 - - - 0.0