Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g1840 | ATGGCGGCCGTATCACCGGCGCCTGATTCTTCTCCGTCGCCTGATTCTCCTTCCGCTCCTTCTCCGCCGCCATCGCCGCCGCTGCAACCTCCTTCTCTGCCGCCGCCGCCGCTTCAACCTCCTTCTCTTCCGCCGCCGCAAGAATCGCCTCCGTCGTCTCCTCCTCCGCCGCCCCGGCAACCATCTGCTACTTCACCTCCCCCTGTTTCTGGAACTCCGCCGCCATTATCTCCACCGCCGACAACTCCGCCACCAACTCCATCCAATGCTCCGCCGCCATCATCACCGGACCCTCCACCGCCGTCGCCAACCCCACCGGTAAACTCCCCTCCACCAACCCCATCTAACCCCCCACCAAATTCGCCTCCTCAAACCCCACCTCCACAATCATCAAACCCATCTCCGCCATCGCCGCCACCAGAAGCAAGTCCCCCTGTTAATCCACCGCCTCCGCCACCGCCCACAAACCCACCTGAGAATCCACCATCTTCACCTCCATCACCGGTGACAATACCTCCTAGAAATTCACCTCCACCTCAAAGACTATCTCCCCCTCCTCCCAGTCCTCTTCCCAAGCCTTCTCCGCCGCCATCTATTCCGCCGTCACCAATGTCGCCTCGGCCGCCATCAATTCCACTGCCTCCACCGTCACCGATGTTGCCTCCACCGCAATCGATTCCACCCCCTCCGGCATCATCGATGTTGCCTCCACCACAGTCAATTCCACCGCCTCCGCCGTCACCGTCTAAAACCCCAACATTGCCTCCAGGAAATGTGACTGGACCAAACTCAAATTCCAACAGAAGTGTTGGAATTAGCACTGGGGGTGCAATTGCAATTGGTGTAGTGGCTGGAATTCTGGCTCTTTTCATTGTTGGTTTTGTTGTATGGTACATCACAAAGCCAAGGAAAAAGAATTCTGGCCATGGGGTTTACATTATGCCATCCTTTAAGGACTCCTCACCTAAGTCAGAATCATCCCTTTTGAAGGTTCATTCCACACTTCACCAAGACGGACATGCCAGTGGTGGAACATACTCTCCAAAAGAGCTTGGTGGGTTTGGGAATTCAAGGTCATTATTTACATATGAAGAACTCTTCAAAGCAACAAATGAATTTTCTACACACAATCTTTTGGGAGAAGGTGGATTTGGCTCTGTTTATAAAGGAAATCTACCAGATGGAAGAGAGGTTGCTGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGCGAGCAGGAGTTCAAGGCTGAAGTCGAGATTATCGGTCGCGTACACCACCGCCATTTGGTTTCGCTTGTGGGTTACTGCATCTTAGACCATCAAAGGTTGCTTGTCTATGATTATGTCCCTAACAATTCCCTTTACTACCATCTTCATGTTAAAGGGGACGACCAGCTCGTTCTAGACTGGGAAAAACGCATTAAGATTGCAGCTGGTGCAGCCCGGGGAATAGCTTATCTTCACGAAGACTGCCATCCTCGAATTATCCATCGAGATATCAAGTCTTCAAACATTCTCCTCGACGAAAACTTTGAAGCTCGGGTTTCAGACTTTGGGCTAGCTAAATTGGCTCTTGATGCACAAACTCATATAACCACCCGTGTCGTTGGAACTTTCGGATATGTTGCCCCTGAATATGCATCGAGCGGAAAGTTAACTGAGAGATCAGATGTATATTCTTTTGGAGTCGTACTTCTCGAGCTGATTACTGGTCGGAAAGCTGTCGACGCATCCCAACCAATGGGGGACGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCACGTGCTCGATAGCCAAGATTTCGAAGCATTGGTGGACCCGAGGCTGGAAAGGAACTATGTCGAAAGTGAAATGCTGAAGATGATAGGAATAGCTGCTGCTTGTGTTCAGTATGCATCTGCGAAGAGACCGCAGATGGGACAGGTTGTTCGAGCTTTCAACAATTTAGTCGATACAGATTTAAGTAATGGAATGAGATTTGGGGAGAGTCGAACTTTCGACTCCGGTCAAAAGTCCGCGGAGTTTAGATTTATCCAAATGCTGGCATTTGGAAACCAAGATTACAGTTCAGATTTTTATAGCCAAGGTAGCTCAAATGTCTGA | 2109 | 50.73 | MAAVSPAPDSSPSPDSPSAPSPPPSPPLQPPSLPPPPLQPPSLPPPQESPPSSPPPPPRQPSATSPPPVSGTPPPLSPPPTTPPPTPSNAPPPSSPDPPPPSPTPPVNSPPPTPSNPPPNSPPQTPPPQSSNPSPPSPPPEASPPVNPPPPPPPTNPPENPPSSPPSPVTIPPRNSPPPQRLSPPPPSPLPKPSPPPSIPPSPMSPRPPSIPLPPPSPMLPPPQSIPPPPASSMLPPPQSIPPPPPSPSKTPTLPPGNVTGPNSNSNRSVGISTGGAIAIGVVAGILALFIVGFVVWYITKPRKKNSGHGVYIMPSFKDSSPKSESSLLKVHSTLHQDGHASGGTYSPKELGGFGNSRSLFTYEELFKATNEFSTHNLLGEGGFGSVYKGNLPDGREVAVKELKIGGGQGEQEFKAEVEIIGRVHHRHLVSLVGYCILDHQRLLVYDYVPNNSLYYHLHVKGDDQLVLDWEKRIKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDAQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGDESLVEWARPLLNHVLDSQDFEALVDPRLERNYVESEMLKMIGIAAACVQYASAKRPQMGQVVRAFNNLVDTDLSNGMRFGESRTFDSGQKSAEFRFIQMLAFGNQDYSSDFYSQGSSNV | 702 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 42810567 | 42816044 | + | Sed0012687.2 | Sed06g1840 | 718383 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g1840 | 702 | CDD | STKc_IRAK | 379 | 651 | - | - | |
Sed06g1840 | 702 | FunFam | proline-rich receptor-like protein kinase PERK8 | 449 | 662 | - | - | |
Sed06g1840 | 702 | SMART | serkin_6 | 373 | 648 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g1840 | 702 | MobiDBLite | consensus disorder prediction | 1 | 267 | - | - | |
Sed06g1840 | 702 | ProSitePatterns | Protein kinases ATP-binding region signature. | 379 | 401 | IPR017441 | GO:0005524(InterPro) | |
Sed06g1840 | 702 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 345 | 448 | - | - | |
Sed06g1840 | 702 | SUPERFAMILY | Protein kinase-like (PK-like) | 357 | 656 | IPR011009 | - | |
Sed06g1840 | 702 | MobiDBLite | consensus disorder prediction | 10 | 255 | - | - | |
Sed06g1840 | 702 | Gene3D | Phosphorylase Kinase; domain 1 | 345 | 448 | - | - | |
Sed06g1840 | 702 | Pfam | Protein kinase domain | 374 | 645 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g1840 | 702 | ProSiteProfiles | Protein kinase domain profile. | 373 | 652 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g1840 | 702 | Gene3D | Transferase(Phosphotransferase) domain 1 | 449 | 665 | - | - | |
Sed06g1840 | 702 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 495 | 507 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed06g1840 | 702 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 247 | 658 | IPR047117 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g1840 | Sed-Chr6:42810567 | Sed07g1970 | Sed-Chr7:34482553 | 3.80E-207 | dispersed | |
Sed14g0768 | Sed-Chr14:9313712 | Sed06g1840 | Sed-Chr6:42810567 | 2.00E-67 | dispersed | |
Sed06g1839 | Sed-Chr6:42810567 | Sed06g1840 | Sed-Chr6:42810567 | 3.20E-216 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79386 | PF00069 | Pkinase | 4.80E-44 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g1840 | - | - | - | 0.0 |