Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1840 ATGGCGGCCGTATCACCGGCGCCTGATTCTTCTCCGTCGCCTGATTCTCCTTCCGCTCCTTCTCCGCCGCCATCGCCGCCGCTGCAACCTCCTTCTCTGCCGCCGCCGCCGCTTCAACCTCCTTCTCTTCCGCCGCCGCAAGAATCGCCTCCGTCGTCTCCTCCTCCGCCGCCCCGGCAACCATCTGCTACTTCACCTCCCCCTGTTTCTGGAACTCCGCCGCCATTATCTCCACCGCCGACAACTCCGCCACCAACTCCATCCAATGCTCCGCCGCCATCATCACCGGACCCTCCACCGCCGTCGCCAACCCCACCGGTAAACTCCCCTCCACCAACCCCATCTAACCCCCCACCAAATTCGCCTCCTCAAACCCCACCTCCACAATCATCAAACCCATCTCCGCCATCGCCGCCACCAGAAGCAAGTCCCCCTGTTAATCCACCGCCTCCGCCACCGCCCACAAACCCACCTGAGAATCCACCATCTTCACCTCCATCACCGGTGACAATACCTCCTAGAAATTCACCTCCACCTCAAAGACTATCTCCCCCTCCTCCCAGTCCTCTTCCCAAGCCTTCTCCGCCGCCATCTATTCCGCCGTCACCAATGTCGCCTCGGCCGCCATCAATTCCACTGCCTCCACCGTCACCGATGTTGCCTCCACCGCAATCGATTCCACCCCCTCCGGCATCATCGATGTTGCCTCCACCACAGTCAATTCCACCGCCTCCGCCGTCACCGTCTAAAACCCCAACATTGCCTCCAGGAAATGTGACTGGACCAAACTCAAATTCCAACAGAAGTGTTGGAATTAGCACTGGGGGTGCAATTGCAATTGGTGTAGTGGCTGGAATTCTGGCTCTTTTCATTGTTGGTTTTGTTGTATGGTACATCACAAAGCCAAGGAAAAAGAATTCTGGCCATGGGGTTTACATTATGCCATCCTTTAAGGACTCCTCACCTAAGTCAGAATCATCCCTTTTGAAGGTTCATTCCACACTTCACCAAGACGGACATGCCAGTGGTGGAACATACTCTCCAAAAGAGCTTGGTGGGTTTGGGAATTCAAGGTCATTATTTACATATGAAGAACTCTTCAAAGCAACAAATGAATTTTCTACACACAATCTTTTGGGAGAAGGTGGATTTGGCTCTGTTTATAAAGGAAATCTACCAGATGGAAGAGAGGTTGCTGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGCGAGCAGGAGTTCAAGGCTGAAGTCGAGATTATCGGTCGCGTACACCACCGCCATTTGGTTTCGCTTGTGGGTTACTGCATCTTAGACCATCAAAGGTTGCTTGTCTATGATTATGTCCCTAACAATTCCCTTTACTACCATCTTCATGTTAAAGGGGACGACCAGCTCGTTCTAGACTGGGAAAAACGCATTAAGATTGCAGCTGGTGCAGCCCGGGGAATAGCTTATCTTCACGAAGACTGCCATCCTCGAATTATCCATCGAGATATCAAGTCTTCAAACATTCTCCTCGACGAAAACTTTGAAGCTCGGGTTTCAGACTTTGGGCTAGCTAAATTGGCTCTTGATGCACAAACTCATATAACCACCCGTGTCGTTGGAACTTTCGGATATGTTGCCCCTGAATATGCATCGAGCGGAAAGTTAACTGAGAGATCAGATGTATATTCTTTTGGAGTCGTACTTCTCGAGCTGATTACTGGTCGGAAAGCTGTCGACGCATCCCAACCAATGGGGGACGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCACGTGCTCGATAGCCAAGATTTCGAAGCATTGGTGGACCCGAGGCTGGAAAGGAACTATGTCGAAAGTGAAATGCTGAAGATGATAGGAATAGCTGCTGCTTGTGTTCAGTATGCATCTGCGAAGAGACCGCAGATGGGACAGGTTGTTCGAGCTTTCAACAATTTAGTCGATACAGATTTAAGTAATGGAATGAGATTTGGGGAGAGTCGAACTTTCGACTCCGGTCAAAAGTCCGCGGAGTTTAGATTTATCCAAATGCTGGCATTTGGAAACCAAGATTACAGTTCAGATTTTTATAGCCAAGGTAGCTCAAATGTCTGA 2109 50.73 MAAVSPAPDSSPSPDSPSAPSPPPSPPLQPPSLPPPPLQPPSLPPPQESPPSSPPPPPRQPSATSPPPVSGTPPPLSPPPTTPPPTPSNAPPPSSPDPPPPSPTPPVNSPPPTPSNPPPNSPPQTPPPQSSNPSPPSPPPEASPPVNPPPPPPPTNPPENPPSSPPSPVTIPPRNSPPPQRLSPPPPSPLPKPSPPPSIPPSPMSPRPPSIPLPPPSPMLPPPQSIPPPPASSMLPPPQSIPPPPPSPSKTPTLPPGNVTGPNSNSNRSVGISTGGAIAIGVVAGILALFIVGFVVWYITKPRKKNSGHGVYIMPSFKDSSPKSESSLLKVHSTLHQDGHASGGTYSPKELGGFGNSRSLFTYEELFKATNEFSTHNLLGEGGFGSVYKGNLPDGREVAVKELKIGGGQGEQEFKAEVEIIGRVHHRHLVSLVGYCILDHQRLLVYDYVPNNSLYYHLHVKGDDQLVLDWEKRIKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDAQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGDESLVEWARPLLNHVLDSQDFEALVDPRLERNYVESEMLKMIGIAAACVQYASAKRPQMGQVVRAFNNLVDTDLSNGMRFGESRTFDSGQKSAEFRFIQMLAFGNQDYSSDFYSQGSSNV 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42810567 42816044 + Sed0012687.2 Sed06g1840 718383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1840 702 CDD STKc_IRAK 379 651 - -
Sed06g1840 702 FunFam proline-rich receptor-like protein kinase PERK8 449 662 - -
Sed06g1840 702 SMART serkin_6 373 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1840 702 MobiDBLite consensus disorder prediction 1 267 - -
Sed06g1840 702 ProSitePatterns Protein kinases ATP-binding region signature. 379 401 IPR017441 GO:0005524(InterPro)
Sed06g1840 702 FunFam Proline-rich receptor-like protein kinase PERK8 345 448 - -
Sed06g1840 702 SUPERFAMILY Protein kinase-like (PK-like) 357 656 IPR011009 -
Sed06g1840 702 MobiDBLite consensus disorder prediction 10 255 - -
Sed06g1840 702 Gene3D Phosphorylase Kinase; domain 1 345 448 - -
Sed06g1840 702 Pfam Protein kinase domain 374 645 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1840 702 ProSiteProfiles Protein kinase domain profile. 373 652 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1840 702 Gene3D Transferase(Phosphotransferase) domain 1 449 665 - -
Sed06g1840 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1840 702 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 247 658 IPR047117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1840 Sed-Chr6:42810567 Sed07g1970 Sed-Chr7:34482553 3.80E-207 dispersed
Sed14g0768 Sed-Chr14:9313712 Sed06g1840 Sed-Chr6:42810567 2.00E-67 dispersed
Sed06g1839 Sed-Chr6:42810567 Sed06g1840 Sed-Chr6:42810567 3.20E-216 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79386 PF00069 Pkinase 4.80E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1840 - - - 0.0