Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1842 ATGAGTGGTGGCAGAAGGAGAAAGCTGCATTTTAGCAAGATCTACTCATTTGCTTGTGGGAAAGCTTCTTTAAGAGAGGATCATTCACAGATTGGCGGTCCGGGGTTTTCTCGAGTTGTTTTCGGTAATGAACCAGACTGTTTCGAGGCCGAAATTCGTAACTATATCGACAATTATGTTAGTACCACCAAGTATACTTTGGCTAATTTCTTGCCTAAGTCCTTGTTTGAGCAATTCAGGAGGGTGGCCAATTTTTACTTTTTAGTTACTGGGATCCTTGCTTTTACTCCCCTTGCTCCTTATACTGCTGTTAGCGCGATTATCCCTCTTATTCTTGTCATTTCGGCTACGATGATCAAAGAAGGTATCGAAGATTGGAGGCGAAAGAAACAGGATATTGAGGTTAACAATAGAAAGGTTAAAGTGCATCAAGGTGATGGAGTTTTTGCGTATACAGAATGGATGAATCTAAAGGTGGGTAATATTGTAAAAGTGGAAAAGGATGAATTCTTTCCAGCAGACATCATCTTGCTTTCATCGAATTATGAGGACGCAGTCTGCTATGTCGAGACGATGAACCTTGATGGTGAGACAAATTTGAAACTAAAACAAGCATTGGAGGTAACTTCTCATATGATTGAGGATCCTATCTTCAACAGATTTAAGGCTATCATCAAATGTGAGGATCCAAATGCAAATTTATACAGTTTTGTTGGCAATTTGGAGTTGAAAGAGCAGCAATATACTCTATCTCCTCAACAACTACTCCTTCGAGGCTCTAAACTCCGGAATACAGATTATATATATGGGGTTGTCGTCTTTACTGGTCGCGATACGAAGGTTATTCAAAACTCTACTGATCCACCTTCAAAGAGAAGCAAAGTTGAGAGGAAGATGGATAGAATTATATATTTTTTGTTCTGTCTTCTATTTTTGCTTGCTCTGATTGGATCTATATTTTTTGGCCTTGTGACTGGTGATGATTTGGAAAATGGGAAAATGAAGAGATGGTATCTCAGGCCCGATGACGCGGAAGTTTTCTTCGATCCAGAAAGGGCTCCATTAGCTGCACTTTTCCATTTTCTTACGGCACTGATGTTGTACAACTACTTCATTCCAATCTCACTGTATGTATCAATAGAAATGGTCAAGGTTCTTCAGTGCATATTTATCAATCAAGATATTAATATGTACTATCAAGAAGCTGATAAGCCTGCTCGCGCTCGCACCTCAAATTTGAATGAAGAACTTGGTCAAGTTGATACGATACTTTCGGACAAGACCGGAACTCTAACCTGTAATTCAATGGAGTTTATCAAGTGTTCAGTGGCAGGGAGGGCTTATGGTTGTGGTTTCACAGAGGTAGAAAGGGCAATAGGCATACAAAAAGATTCACAACTAAATGAAGCTGTAAATAGGGGAAATCACAAAGAGGATGATACTAATAAAAATTCATATATCAAGGGCTTTAATTTTAAGGATGATAGGATTATGAATGGGAACTGGGTTAATGAGCCTCGTGCAAATGTTATCCAAATGTTTTTCCGTCTTCTCGCAACTTGTCAGACGGCAATACCTGAAATCAATGACGACAGTGGAGAGATTTCTTACGAGGCTGAATCACCGGATGAAGCGGCATTTGTGATTGCAGCTAGGGAACTCGGCTTTGAGTTCTACAAAAGAACACAGACAAGCATATCACTACATGAGTTTGATCCTTCATTAGGCAAGAAAGTTGACAGGAAATATAAACTGTTGCACGTTTTGGAGTTCAATAGCTCAAGAAAGCGGATGTCTGTCATCGTAAGAAACAAGGAGGGTAAAATAATGTTACTTTGTAAAGGTGCAGACAGTGTAATGTTTGAAAGGCTTGGAAAAAATGGAAGGGAGTTTGAAGAGGAGACTAAGGAACATGTCAGCGAGTATGCTGACGCAGGCTTGAGAACTTTGATACTAGCCTACCGCGAGCTCGATGAGGACGAGTACAGAGAATTCGATGGCAAGTTCACTATCGCCAAAAATTCGGTTAGCATAGATCGAGAATCATTGATTGATAAAGTAACTGATAAAATCGAAAGGAATCTAATTCTTCTTGGTGCCACTGCTGTTGAGGACAAGCTTCAAAATGGGGTCCCTGAGTGCATAGACAGGCTTGCTCAAGCAGGAATTAAGATTTGGGTTTTGACTGGGGACAAAATGGAGACTGCCATAAATATTGGTTTTGCCTGTAGCTTACTAAGACGAGATATGAAGCAGATTGTCATTACTCTGGACACATCAGAAATTAAGGCGCTTGAAAAAACAGGGGATAAGGCTTCTATCTTCAAGGCATCGATGCAATGCGTCCACGATCAGATTACTCGTGGAAGAGCTCAGATCAGTTCATCAAGTGGGCTATCTGAAGCATTTGCATTAATTATTGATGGAAAATCACTTTCTTATGCTTTGGAGGATAGTGTGAAGGCATTGTTTCTTGATCTAGCGATATGTTGTGCTTCTGTTATTTGCTGCCGCTCGTCTCCAAAACAGAAGGCACTGGTAACAAGGTTAGTTAAATCAGGAACAAGGAAAACAACTTTAGCTATCGGCGATGGTGCCAATGATGTAGGAATGCTTCAAGAAGCGGACATTGGAGTCGGAATTAGTGGTGCCGAAGGAATGCAGGCTGTTATGTCGAGTGATGTTGCGATTGCGCAGTTTAAATATTTAGAGCACCTGCTTCTTGTGCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTATAAGAATATTACTTTTGGTTTTACCATATTCTTATATGAATCCTTCACAACATTCTCTGGGCAACCTGCATACAATGATTGGTTTTTATCACTTTACAATGTTTTCTTCTCGTCACTTCCAGTGGTAGCTTTGGGAGTTTTTGATCAGGATGTCTCCGCACGACTCTGCCTCCAGTTTCCTCTCTTATACCAACAAGGGGTGAAGAATGTTCTTTTCAGCTGGTTTCGAATACTCAGTTGGATGTTTAATGGATTGTGCAGTGCTGTGATCATTTTCTTCCTATGCACTAGAGCACTTGAGAATCAGGCGTTCAACTCCGACGGGAAAACTGTAGGGCGGGATATTCTCGGTGCGACAATGTACTCATGTGTTGTTTGGGTTGTGAACTTGCAAATGGCACTTGCTATTAGTTACTTCACCTTGATTCAACATCTTTTCATCTGGGGTTCAATTGCGATCTGGTACATTTTTCTCCTGATTTACGGGTCCATGACCCCGACTTTTTCAATCAATGCTTACCAGATCTTCATCGAAATCCTTGCCCCGTGCCCTTCCTACTGGCTAGTTCTCATCTTTGTGGTGATCTCAACACTCATTCCTTACTTCTCCTACTCAGCAATACAAATGAGGTTCTTCCCTATGTATCATCAAATGATTTTATGGATTAGGAATGAAGGACAACTACACAATCAAGAATACTGCGATATTTTGCGGAAGAGCTCACTCCGATCAACGAGCGTGGGTTTGATAGCACGGTTAGCAGCCAATAGGAACCACACAAAAGAGAGAAACCAGACTACTGCTTAA 3588 40.77 MSGGRRRKLHFSKIYSFACGKASLREDHSQIGGPGFSRVVFGNEPDCFEAEIRNYIDNYVSTTKYTLANFLPKSLFEQFRRVANFYFLVTGILAFTPLAPYTAVSAIIPLILVISATMIKEGIEDWRRKKQDIEVNNRKVKVHQGDGVFAYTEWMNLKVGNIVKVEKDEFFPADIILLSSNYEDAVCYVETMNLDGETNLKLKQALEVTSHMIEDPIFNRFKAIIKCEDPNANLYSFVGNLELKEQQYTLSPQQLLLRGSKLRNTDYIYGVVVFTGRDTKVIQNSTDPPSKRSKVERKMDRIIYFLFCLLFLLALIGSIFFGLVTGDDLENGKMKRWYLRPDDAEVFFDPERAPLAALFHFLTALMLYNYFIPISLYVSIEMVKVLQCIFINQDINMYYQEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGRAYGCGFTEVERAIGIQKDSQLNEAVNRGNHKEDDTNKNSYIKGFNFKDDRIMNGNWVNEPRANVIQMFFRLLATCQTAIPEINDDSGEISYEAESPDEAAFVIAARELGFEFYKRTQTSISLHEFDPSLGKKVDRKYKLLHVLEFNSSRKRMSVIVRNKEGKIMLLCKGADSVMFERLGKNGREFEEETKEHVSEYADAGLRTLILAYRELDEDEYREFDGKFTIAKNSVSIDRESLIDKVTDKIERNLILLGATAVEDKLQNGVPECIDRLAQAGIKIWVLTGDKMETAINIGFACSLLRRDMKQIVITLDTSEIKALEKTGDKASIFKASMQCVHDQITRGRAQISSSSGLSEAFALIIDGKSLSYALEDSVKALFLDLAICCASVICCRSSPKQKALVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKYLEHLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYESFTTFSGQPAYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVKNVLFSWFRILSWMFNGLCSAVIIFFLCTRALENQAFNSDGKTVGRDILGATMYSCVVWVVNLQMALAISYFTLIQHLFIWGSIAIWYIFLLIYGSMTPTFSINAYQIFIEILAPCPSYWLVLIFVVISTLIPYFSYSAIQMRFFPMYHQMILWIRNEGQLHNQEYCDILRKSSLRSTSVGLIARLAANRNHTKERNQTTA 1195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42821145 42832354 - Sed0023028.1 Sed06g1842 718385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1842 1195 Gene3D - 544 674 IPR023299 GO:0000166(InterPro)
Sed06g1842 1195 Pfam E1-E2 ATPase 136 328 - -
Sed06g1842 1195 SUPERFAMILY HAD-like 419 917 IPR036412 -
Sed06g1842 1195 NCBIfam HAD-IC family P-type ATPase 828 944 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed06g1842 1195 FunFam Phospholipid-transporting ATPase 540 698 - -
Sed06g1842 1195 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 661 IPR023299 GO:0000166(InterPro)
Sed06g1842 1195 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 34 1150 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed06g1842 1195 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
Sed06g1842 1195 PRINTS P-type cation-transporting ATPase superfamily signature 760 770 - -
Sed06g1842 1195 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Sed06g1842 1195 Pfam Cation transport ATPase (P-type) 530 624 - -
Sed06g1842 1195 NCBIfam phospholipid-translocating P-type ATPase 55 1146 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed06g1842 1195 FunFam Phospholipid-transporting ATPase 698 902 - -
Sed06g1842 1195 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1140 IPR023298 -
Sed06g1842 1195 Pfam Phospholipid-translocating ATPase N-terminal 51 106 IPR032631 -
Sed06g1842 1195 CDD P-type_ATPase_APLT_Dnf-like 57 1022 - -
Sed06g1842 1195 Gene3D - 694 902 IPR023214 -
Sed06g1842 1195 SFLD p-type atpase 408 913 IPR044492 -
Sed06g1842 1195 SFLD Haloacid Dehalogenase 408 913 - -
Sed06g1842 1195 FunFam Phospholipid-transporting ATPase 116 286 - -
Sed06g1842 1195 SUPERFAMILY Calcium ATPase, transduction domain A 139 283 IPR008250 -
Sed06g1842 1195 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Sed06g1842 1195 Gene3D - 115 286 - -
Sed06g1842 1195 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1140 IPR032630 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1587 Sed-Chr6:40674301 Sed06g1842 Sed-Chr6:42821145 2.00E-272 dispersed
Sed06g1588 Sed-Chr6:40674301 Sed06g1842 Sed-Chr6:42821145 5.40E-269 dispersed
Sed06g1842 Sed-Chr6:42821145 Sed07g1973 Sed-Chr7:34517103 0.00E+00 dispersed
Sed06g1842 Sed-Chr6:42821145 Sed06g1843 Sed-Chr6:42821145 0.00E+00 tandem
Sed06g1842 Sed-Chr6:42821145 Sed07g1972 Sed-Chr7:34517103 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1842 K01530 - csv:101207148 2105.1