Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed06g1844 | ATGAATCTAAAGGTGGGTAATATTGTAAAAGTGGAAAAGGATGAATTCTTTCCAGCAGACATCATCTTGCTTTCATCGAATTATGAGGACGCAGTCTGCTATGTCGAGACGATGAACCTTGATGGTGAGACAAATTTGAAACTAAAACAAGCATTGGAGGTAACTTCTCATATGATTGAGGATCCTATCTTCAACAGATTTAAGGCTATCATCAAATGTGAGGATCCAAATGCAAATTTATACAGTTTTGTTGGCAATTTGGAGTTGAAAGAGCAGCAATATACTCTATCTCCTCAACAACTACTCCTTCGAGGCTCTAAACTCCGGAATACAGATTATATATATGGGGTTGTCGTCTTTACTGGTCGCGATACGAAGGTTATTCAAAACTCTACTGATCCACCTTCAAAGAGAAGCAAAGTTGAGAGGAAGATGGATAGAATTATATATTTTTTGTTCTGTCTTCTATTTTTGCTTGCTCTGATTGGATCTATATTTTTTGGCCTTGTGACTGGTGATGATTTGGAAAATGGGAAAATGAAGAGATGGTATCTCAGGCCCGATGACGCGGAAGTTTTCTTCGATCCAGAAAGGGCTCCATTAGCTGCACTTTTCCATTTTCTTACGGCACTGATGTTGTACAACTACTTCATTCCAATCTCACTGTATGTATCAATAGAAATGGTCAAGGTTCTTCAGTGCATATTTATCAATCAAGATATTAATATGTACTATCAAGAAGCTGATAAGCCTGCTCGCGCTCGCACCTCAAATTTGAATGAAGAACTTGGTCAAGTTGATACGATACTTTCGGACAAGACCGGAACTCTAACCTGTAATTCAATGGAGTTTATCAAGTGTTCAGTGGCAGGGAGGGCTTATGGTTGTGGTTTCACAGAGGTAGAAAGGGCAATAGGCATACAAAAAGATTCACAACTAAATGAAGCTGTAAATAGGGGAAATCACAAAGAGGATGATACTAATAAAAATTCATATATCAAGGGCTTTAATTTTAAGGATGATAGGATTATGAATGGGAACTGGGTTAATGAGCCTCGTGCAAATGTTATCCAAATGTTTTTCCGTCTTCTCGCAACTTGTCAGACGGCAATACCTGAAATCAATGACGACAGTGGAGAGATTTCTTACGAGGCTGAATCACCGGATGAAGCGGCATTTGTGATTGCAGCTAGGGAACTCGGCTTTGAGTTCTACAAAAGAACACAGACAAGCATATCACTACATGAGTTTGATCCTTCATTAGGCAAGAAAGTTGACAGGAAATATAAACTGTTGCACGTTTTGGAGTTCAATAGCTCAAGAAAGCGGATGTCTGTCATCGTAAGAAACAAGGAGGGTAAAATAATGTTACTTTGTAAAGGTGCAGACAGTGTAATGTTTGAAAGGCTTGGAAAAAATGGAAGGGAGTTTGAAGAGGAGACTAAGGAACATGTCAGCGAGTATGCTGACGCAGGCTTGAGAACTTTGATACTAGCCTACCGCGAGCTCGATGAGGACGAGTACAGAGAATTCGATGGCAAGTTCACTATCGCCAAAAATTCGGTTAGCATAGATCGAGAATCATTGATTGATAAAGTAACTGATAAAATCGAAAGGAATCTAATTCTTCTTGGTGCCACTGCTGTTGAGGACAAGCTTCAAAATGGGGTCCCTGAGTGCATAGACAGGCTTGCTCAAGCAGGAATTAAGATTTGGGTTTTGACTGGGGACAAAATGGAGACTGCCATAAATATTGGTTTTGCCTGTAGCTTACTAAGACGAGATATGAAGCAGATTGTCATTACTCTGGACACATCAGAAATTAAGGCGCTTGAAAAAACAGGGGATAAGGCTTCTATCTTCAAGGCATCGATGCAATGCGTCCACGATCAGATTACTCGTGGAAGAGCTCAGATCAGTTCATCAAGTGGGCTATCTGAAGCATTTGCATTAATTATTGATGGAAAATCACTTTCTTATGCTTTGGAGGATAGTGTGAAGGCATTGTTTCTTGATCTAGCGATATGTTGTGCTTCTGTTATTTGCTGCCGCTCGTCTCCAAAACAGAAGGCACTGGTAACAAGGTTAGTTAAATCAGGAACAAGGAAAACAACTTTAGCTATCGGCGATGGTGCCAATGATGTAGGAATGCTTCAAGAAGCGGACATTGGAGTCGGAATTAGTGGTGCCGAAGGAATGCAGGCTGTTATGTCGAGTGATGTTGCGATTGCGCAGTTTAAATATTTAGAGCACCTGCTTCTTGTGCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTATAAGAATATTACTTTTGGTTTTACCATATTCTTATATGAATCCTTCACAACATTCTCTGGGCAACCTGCATACAATGATTGGTTTTTATCACTTTACAATGTTTTCTTCTCGTCACTTCCAGTGGTAGCTTTGGGAGTTTTTGATCAGGATGTCTCCGCACGACTCTGCCTCCAGTTTCCTCTCTTATACCAACAAGGGGTGAAGAATGTTCTTTTCAGCTGGTTTCGAATACTCAGTTGGATGTTTAATGGATTGTGCAGTGCTGTGATCATTTTCTTCCTATGCACTAGAGCACTTGAGAATCAGGCGTTCAACTCCGACGGGAAAACTGTAGGGCGGGATATTCTCGGTGCGACAATGTACTCATGTGTTGTTTGGGTTGTGAACTTGCAAATGGCACTTGCTATTAGTTACTTCACCTTGATTCAACATCTTTTCATCTGGGGTTCAATTGCGATCTGGTACATTTTTCTCCTGATTTACGGGTCCATGACCCCGACTTTTTCAATCAATGCTTACCAGATCTTCATCGAAATCCTTGCCCCGTGCCCTTCCTACTGGCTAGTTCTCATCTTTGTGGTGATCTCAACACTCATTCCTTACTTCTCCTACTCAGCAATACAAATGAGGTTCTTCCCTATGTATCATCAAATGATTTTATGGATTAGGAATGAAGGACAACTACACAATCAAGAATACTGCGATATTTTGCGGAAGAGCTCACTCCGATCAACGAGCGTGGGTTTGATAGCACGGTTAGCAGCCAATAGGAACCACACAAAAGAGAGAAACCAGACTACTGCTTAA | 3126 | 40.69 | MNLKVGNIVKVEKDEFFPADIILLSSNYEDAVCYVETMNLDGETNLKLKQALEVTSHMIEDPIFNRFKAIIKCEDPNANLYSFVGNLELKEQQYTLSPQQLLLRGSKLRNTDYIYGVVVFTGRDTKVIQNSTDPPSKRSKVERKMDRIIYFLFCLLFLLALIGSIFFGLVTGDDLENGKMKRWYLRPDDAEVFFDPERAPLAALFHFLTALMLYNYFIPISLYVSIEMVKVLQCIFINQDINMYYQEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGRAYGCGFTEVERAIGIQKDSQLNEAVNRGNHKEDDTNKNSYIKGFNFKDDRIMNGNWVNEPRANVIQMFFRLLATCQTAIPEINDDSGEISYEAESPDEAAFVIAARELGFEFYKRTQTSISLHEFDPSLGKKVDRKYKLLHVLEFNSSRKRMSVIVRNKEGKIMLLCKGADSVMFERLGKNGREFEEETKEHVSEYADAGLRTLILAYRELDEDEYREFDGKFTIAKNSVSIDRESLIDKVTDKIERNLILLGATAVEDKLQNGVPECIDRLAQAGIKIWVLTGDKMETAINIGFACSLLRRDMKQIVITLDTSEIKALEKTGDKASIFKASMQCVHDQITRGRAQISSSSGLSEAFALIIDGKSLSYALEDSVKALFLDLAICCASVICCRSSPKQKALVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKYLEHLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYESFTTFSGQPAYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVKNVLFSWFRILSWMFNGLCSAVIIFFLCTRALENQAFNSDGKTVGRDILGATMYSCVVWVVNLQMALAISYFTLIQHLFIWGSIAIWYIFLLIYGSMTPTFSINAYQIFIEILAPCPSYWLVLIFVVISTLIPYFSYSAIQMRFFPMYHQMILWIRNEGQLHNQEYCDILRKSSLRSTSVGLIARLAANRNHTKERNQTTA | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 42821145 | 42832354 | - | Sed0023028.3 | Sed06g1844 | 718387 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed06g1844 | 1041 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 272 | 278 | IPR018303 | - | |
| Sed06g1844 | 1041 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 2 | 996 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
| Sed06g1844 | 1041 | FunFam | Phospholipid-transporting ATPase | 386 | 544 | - | - | |
| Sed06g1844 | 1041 | Pfam | Cation transport ATPase (P-type) | 376 | 470 | - | - | |
| Sed06g1844 | 1041 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 335 | 507 | IPR023299 | GO:0000166(InterPro) | |
| Sed06g1844 | 1041 | NCBIfam | HAD-IC family P-type ATPase | 674 | 790 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed06g1844 | 1041 | SFLD | Haloacid Dehalogenase | 254 | 759 | - | - | |
| Sed06g1844 | 1041 | SUPERFAMILY | HAD-like | 265 | 763 | IPR036412 | - | |
| Sed06g1844 | 1041 | SUPERFAMILY | Calcium ATPase, transduction domain A | 2 | 129 | IPR008250 | - | |
| Sed06g1844 | 1041 | SFLD | p-type atpase | 254 | 759 | IPR044492 | - | |
| Sed06g1844 | 1041 | Gene3D | - | 390 | 520 | IPR023299 | GO:0000166(InterPro) | |
| Sed06g1844 | 1041 | Gene3D | - | 1 | 132 | - | - | |
| Sed06g1844 | 1041 | FunFam | Phospholipid-transporting ATPase | 544 | 748 | - | - | |
| Sed06g1844 | 1041 | Gene3D | - | 540 | 748 | IPR023214 | - | |
| Sed06g1844 | 1041 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 736 | 986 | IPR032630 | - | |
| Sed06g1844 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 708 | 727 | - | - | |
| Sed06g1844 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 606 | 616 | - | - | |
| Sed06g1844 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 270 | 284 | - | - | |
| Sed06g1844 | 1041 | NCBIfam | phospholipid-translocating P-type ATPase | 2 | 992 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
| Sed06g1844 | 1041 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 132 | 986 | IPR023298 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed06g1844 | Sed-Chr6:42821145 | Sed07g1972 | Sed-Chr7:34517103 | 0.00E+00 | dispersed | |
| Sed06g1843 | Sed-Chr6:42821145 | Sed06g1844 | Sed-Chr6:42821145 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed06g1844 | K01530 | - | csv:101207148 | 1820.05 |